Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G16760 393 / 1e-137 Calcium-dependent phosphotriesterase superfamily protein (.1) AT2G47370 373 / 2e-129 Calcium-dependent phosphotriesterase superfamily protein (.1) AT5G28660 150 / 2e-44 NHL domain-containing protein (.1) AT2G01410 105 / 2e-25 NHL domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G156300 [exp] 117 / 5e-30 AT2G01410 431 / 3e-151 NHL domain-containing protein (.1) Potri.006G111600 [exp] 117 / 6e-30 AT2G01410 375 / 5e-129 NHL domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015347 [exp] 396 / 1e-138 AT2G16760 374 / 6e-130 Calcium-dependent phosphotriesterase superfamily protein (.1) Lus10001126 [exp] 403 / 2e-135 AT4G18905 427 / 5e-142 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10031240 [exp] 102 / 2e-24 AT2G01410 458 / 1e-161 NHL domain-containing protein (.1) Lus10031811 [exp] 96 / 6e-22 AT2G01410 452 / 3e-159 NHL domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G120300.2 pacid=42763445 polypeptide=Potri.014G120300.2.p locus=Potri.014G120300 ID=Potri.014G120300.2.v4.1 annot-version=v4.1 ATGGCCTTTTCACTCTGCTCTACAAAGACCCTCCTCTTTCTCTTGCTCATCTCAGCCATTCCTATTGCCTTTATTATCTCCATGGAGCTCGCCAAGCCGC CAACCCACGTGTACCACTACCACAGCTCAGGATTCTTCCGCGAGAGCGCCAAGTGGGATGATCTAAACCGTCGATTCCTCGTCTCCTTCATGGAAGGTGG CATCGGCGAGATCGCCGTCCCCGAAGATCATGGATCGTCATTGGAAGAGGCTGTTTTAAAGGAAGTCACGGTGGTTAAAGACCCTGACTTGACCGGGAAC TCTTCTCTTGGTATCGTGGTTGACCGGCCGAGGAATCGCCTTCTGGTGGCTATTAGTGATGTATTAGGGAACAACTACAACGCCCTCGCTGCTTATGATT TGTCCACGTGGGATCGTTTGTTTCTTACCAAACTTGGTGGCTCAGACAATGAGAAATCCTTTGCCGATGACGTAGCAGTTGATGCAGAAGGTAATGCCTA TGTTACTGATGCCAAATCCAATAAGATTTGGAAGGTTGGGGCGGATGGGAAGTTCGTATCCTTTATCAGAAATCCACACTTCGTTGCGAAAGAGTGGTAC AAGAACCTGATTGGGCTAAATGGGATTGTTTACCACCCAGATGGGTTCTTGATTGTCATCCATACCTTTAGTGGCATGTTATATAAGATTGACATAGCCA AGGAAGATCATGAAGTCAAGTTAATTAAAGTAGCCGGAGGCTCACTTGCATTTGGAGATGGTCTAGAACTCTTGTCTCCAACTAAACTTGTAGTTGCCGG AAATCCTTCCGGGAGACTGGTGGAGAGCTCCGATAGGTGGGAGACGGCGTCTGTTGTGGCAAAGTTTAAGGGGCCTGCTCATAGGTTGGCAACAGCAGCA ACTGTCAAGGATGGGAGGGTTTATCTTAACCACTTGCTTGGTATGGGATACCCTAAAAGGAAGCATGCTCTTGTCGAGGCTGTTTTTTCTATTTGA
AA sequence Show only first row Show all	>Potri.014G120300.2 pacid=42763445 polypeptide=Potri.014G120300.2.p locus=Potri.014G120300 ID=Potri.014G120300.2.v4.1 annot-version=v4.1 MAFSLCSTKTLLFLLLISAIPIAFIISMELAKPPTHVYHYHSSGFFRESAKWDDLNRRFLVSFMEGGIGEIAVPEDHGSSLEEAVLKEVTVVKDPDLTGN SSLGIVVDRPRNRLLVAISDVLGNNYNALAAYDLSTWDRLFLTKLGGSDNEKSFADDVAVDAEGNAYVTDAKSNKIWKVGADGKFVSFIRNPHFVAKEWY KNLIGLNGIVYHPDGFLIVIHTFSGMLYKIDIAKEDHEVKLIKVAGGSLAFGDGLELLSPTKLVVAGNPSGRLVESSDRWETASVVAKFKGPAHRLATAA TVKDGRVYLNHLLGMGYPKRKHALVEAVFSI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G16760			Calcium-dependent phosphotries...		Potri.014G120300 [exp]	0	1
AT1G22380		ATUGT85A3	UDP-glucosyl transferase 85A3 ...		Potri.016G020500 [exp]	3.46	0.8583
AT3G02720			Class I glutamine amidotransfe...		Potri.017G143940 [exp]	4.47	0.8260
					Potri.006G256900 [exp]	5.00	0.8679
AT1G22340		ATUGT85A7	UDP-glucosyl transferase 85A7 ...		Potri.016G020800 [exp]	5.19	0.8485
AT1G02930		ATGST1, GST1, E...	EARLY RESPONSIVE TO DEHYDRATIO...		Potri.002G207093 [exp]	10.24	0.8414
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.006G207300 [exp]	11.53	0.8340	ILR1.1
AT3G44735		PSK1, ATPSK3	PHYTOSULFOKINE 3 PRECURSOR (.1...		Potri.004G188200 [exp]	18.54	0.8438	PSK6.2
AT3G27200			Cupredoxin superfamily protein...		Potri.016G015200 [exp]	21.90	0.7886
AT5G53970		TAT7	tyrosine aminotransferase 7, T...		Potri.017G014000 [exp]	22.71	0.8220
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.001G369100 [exp]	24.37	0.8098	ATCSLE1.1

Compare expression of checked genes

Potri.014G120300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.