Plant FIBer expression Database

Potri.014G120900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02030 1003 / 0 Vps51/Vps67 family (components of vesicular transport) protein (.1), Vps51/Vps67 family (components of vesicular transport) protein (.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G196300
[exp]
1314 / 0 AT4G02030 1020 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1), Vps51/Vps67 family (components of vesicular transport) protein (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041387
[exp]
1037 / 0 AT4G02030 1051 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1), Vps51/Vps67 family (components of vesicular transport) protein (.2)
Lus10036541
[exp]
294 / 7e-91 AT4G02030 284 / 3e-87 Vps51/Vps67 family (components of vesicular transport) protein (.1), Vps51/Vps67 family (components of vesicular transport) protein (.2)
PFAM info
Representative CDS sequence
>Potri.014G120900.1 pacid=42762622 polypeptide=Potri.014G120900.1.p locus=Potri.014G120900 ID=Potri.014G120900.1.v4.1 annot-version=v4.1
ATGGGGGAAGACGATATGCCGTTCGATGATAAGGCAAAGAGAACGAGAGATTTGTTATCAAGCTTCTATTCTCCAGACCCTTCAGTTTCTAATACTAGCA
ATTCTTTCAAATTTGCGTCTTTAGATGCCATTAACACCACCTCCTTCGACGCCGAACAGTACATGAATCTCCTGGTGCAAAAATCAAATTTGGAAGGGCT
TCTACAGAGGCATGTTGAAATGGCAGCTGAGATAAAAAATCTAGACACCGATTTGCAAATGCTAGTTTATGAAAATTACAACAAGTTTATTAGCGCCACC
GACACAATTAAAAGGATGAAAAGTAATATTGTGGGCATGGAAGCAAGTATGGAGCAGCTTCTTGGCAAGATAACATCGGTACAATCAAGAAGTGATGGTG
TGAACACTTCTCTTTTCGAAAAGAGAGAACATATAGAGAAATTGCATCGCACACACAACCTTCTTCGAAAAATTCAGTTCATATATGATCTACCTGCTAG
ACTCGGGAAGTGTATTAAATCAGAGACATATGCTGATGCAGTCAAGATCTACATTGGAGCAATGCCAATTTTTAAGGCCTATGGGGACTCATCATTCCAG
GATTGTAAGCAAGCATCTGAAGAAGCTATGGCCACTATTACAAAAAATTTGCAGGGAAAGCTATTCTTGGATTCTGAATCCATACAAGCAAGGGCTGAGG
CCGCAGTACTTCTTAAGAAGTTGAATTTTCCGATGGACAACTTAAAAGCAAAACTATTTGAAAAGCTAGAGCAATCTCTTGAAGGCCTTCAGCTCAAGCA
TGAAGACATAGCCAATGTATTGGTAGAATCTAACAACCCTTCAGAACAAGGAAACAATACCGAGTCAGTTCCTGGTTCCGCGCATGATGCTTTAGTTTGT
GAGTTTGCTGAAGCTGTTCGAGCTTATCAAGTAATTTTTCCTGATTCAGAAAAGCAACTGATTAAACTTTCTCAAGACTTGATTGCCAAGCACTTTGAGA
TTACTGCGGGTTACATAAAGGAGTGGATTCCAATTGCTAATTTTCTGGGTGCTCTTCGAATTATATGGAAAGATGTTCACCTGATGGATAAAGTGTTGCG
TGAGGCTCTTCTCCCTGATTGTTCTTTGAAGGCTTCCCAGGTGGCTGTCAAACAATATATAAAAAGCACATTTTCTCACCTTCTTCATGATATCTCAGAT
TCCCTAACCAATGTCCATATCAAACCAAAGGAGGAAGCAAAAGAGCATCTTTTGGTGGTTTTCCTTGAGGCAGGAAAAACTGCAGTTCTTCAAGGGAGCG
TGAATGTGTTACTGGACTTCCGCCAACTTCTTGAGGAAAACTTAGGAGGGCTTCAACTGAGCAACTTGATTATTGTGTGGGTTCGAGAAGGATTTCAAGA
TTTCTTCAGGGCACTTCATGATCGGCTCCTCTTGATTTCAGGGAAAAATAAATCTGCCAGTCAAGATGAAAATTCCACAGAGGGTATGCAGGTTGAGAAA
GTGATTCCAGGCCTTGTCCTTGTGCTGGCTCAACTGTCTGTCTTTATTGAACAAACTGCCATCCCTAGAATTACTGAGGAAATAGCTGCTTATTTCTCTG
GTGGTGGTGGTCTTGCTTCTGAAAATGGGCCAGCACTTGTTCCTGGTGAAATTTGTCGAACCTTTCATTCAGATGGTGAAATACTTCTACAGCATTATAT
AAACATGATAACTCAAAAAATATTGGTTCTCCTGAGGAAGAGGTTTACAGCTCCAAATTGGGTCAAGCACAAGGAACCTAGAGAAGTTCATATGTTTGTT
GATTTATTCCTTCAAGAGTTGGAAGCAAAAAGAACAGAGGCAAAGCAGATATTACCTCATGGAGTACTCCGCAAGCATCGTCGCTCTGAAAGCAATGGAA
GCACTGCTTCCTCTCGCAGCAATCCATTACGAGAGGACAAAATGATTCGGTCAAACACTCATAGGGCCAGGAGTCAACTTCTTGAAACCCACCTGGCAAA
ATTGTTCAAGCAAAAAGTTGAGATTTTTACAAAAACTGAATATACACAGGAATCTGTTGTTACTACTGTAGTAAAACTTTGTCTTAAGAGTTTACTAGAA
TTTGTTCGACTCCAGACTTTCAACCGGAGTGGATTCCAGCAAATTCAGTTGGATATTCAGTTCCTAAGGGCTTCTCTTAAGGAAATTGTTGAAGACGAAG
CTGCCATTGACTTTTTGCTTGATGAGGTGATTGTTGGTGCTTCGGAACGTTGTCTTGATCCAATTCCTTTAGAGCCTCCTATCTTGGATAAACTAATTCA
AGCAAAGTTGGCAAAAGAGAAGGAACAGACTCCAATTTCTCTGTAA
AA sequence
>Potri.014G120900.1 pacid=42762622 polypeptide=Potri.014G120900.1.p locus=Potri.014G120900 ID=Potri.014G120900.1.v4.1 annot-version=v4.1
MGEDDMPFDDKAKRTRDLLSSFYSPDPSVSNTSNSFKFASLDAINTTSFDAEQYMNLLVQKSNLEGLLQRHVEMAAEIKNLDTDLQMLVYENYNKFISAT
DTIKRMKSNIVGMEASMEQLLGKITSVQSRSDGVNTSLFEKREHIEKLHRTHNLLRKIQFIYDLPARLGKCIKSETYADAVKIYIGAMPIFKAYGDSSFQ
DCKQASEEAMATITKNLQGKLFLDSESIQARAEAAVLLKKLNFPMDNLKAKLFEKLEQSLEGLQLKHEDIANVLVESNNPSEQGNNTESVPGSAHDALVC
EFAEAVRAYQVIFPDSEKQLIKLSQDLIAKHFEITAGYIKEWIPIANFLGALRIIWKDVHLMDKVLREALLPDCSLKASQVAVKQYIKSTFSHLLHDISD
SLTNVHIKPKEEAKEHLLVVFLEAGKTAVLQGSVNVLLDFRQLLEENLGGLQLSNLIIVWVREGFQDFFRALHDRLLLISGKNKSASQDENSTEGMQVEK
VIPGLVLVLAQLSVFIEQTAIPRITEEIAAYFSGGGGLASENGPALVPGEICRTFHSDGEILLQHYINMITQKILVLLRKRFTAPNWVKHKEPREVHMFV
DLFLQELEAKRTEAKQILPHGVLRKHRRSESNGSTASSRSNPLREDKMIRSNTHRARSQLLETHLAKLFKQKVEIFTKTEYTQESVVTTVVKLCLKSLLE
FVRLQTFNRSGFQQIQLDIQFLRASLKEIVEDEAAIDFLLDEVIVGASERCLDPIPLEPPILDKLIQAKLAKEKEQTPISL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G02030 Vps51/Vps67 family (components... Potri.014G120900
[exp]
0 1
AT4G36630 EMB2754 EMBRYO DEFECTIVE 2754, Vacuola... Potri.005G123000
[exp]
3.60 0.6999
AT1G16010 AtMRS2-1, AtMGT... magnesium transporter 2 (.1.2.... Potri.003G183600
[exp]
5.65 0.6629
AT1G17550 HAB2 homology to ABI2 (.1) Potri.001G198501
[exp]
8.00 0.6951
AT1G31360 MED34, ATRECQ2,... ARABIDOPSIS THALIANA RECQ 2, ... Potri.003G104300
[exp]
10.00 0.7235
AT5G42320 Zn-dependent exopeptidases sup... Potri.002G010800
[exp]
13.22 0.6609
AT5G58510 unknown protein Potri.009G076000
[exp]
20.78 0.7232
AT1G02145 EBS4, ALG12 EMS-MUTAGENIZED BRI1\(BRASSINO... Potri.002G139200
[exp]
24.43 0.7233
AT2G27900 unknown protein Potri.009G002900
[exp]
28.26 0.6926
AT1G18340 basal transcription factor com... Potri.005G176600
[exp]
31.55 0.7187
AT2G14170 ALDH6B2 aldehyde dehydrogenase 6B2 (.... Potri.009G078700
[exp]
34.20 0.6915

Potri.014G120900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.