Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PRL.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02060 1255 / 0 MCM7, PRL PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT5G44635 345 / 5e-107 MCM6 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) AT2G16440 337 / 4e-104 MCM4 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT5G46280 332 / 6e-103 MCM3 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) AT1G44900 321 / 4e-97 ATMCM2, MCM2 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) AT2G07690 298 / 2e-90 MCM5 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) AT3G09660 262 / 1e-76 MCM8 minichromosome maintenance 8 (.1) AT2G14050 226 / 1e-64 MCM9 minichromosome maintenance 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G131600 [exp] 350 / 6e-110 AT5G46280 1123 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.001G074000 [exp] 342 / 4e-106 AT5G44635 1312 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.009G121500 [exp] 338 / 1e-104 AT2G16440 1236 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Potri.001G070500 [exp] 313 / 2e-94 AT1G44900 1348 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.018G112800 [exp] 306 / 3e-93 AT2G07690 1173 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.006G188700 [exp] 293 / 1e-88 AT2G07690 1170 / 0.0 MINICHROMOSOME MAINTENANCE 5, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Potri.006G131900 [exp] 253 / 3e-73 AT3G09660 1037 / 0.0 minichromosome maintenance 8 (.1) Potri.019G014403 [exp] 220 / 4e-62 AT2G14050 989 / 0.0 minichromosome maintenance 9 (.1) Potri.003G157001 [exp] 79 / 6e-18 AT5G44635 0 / 1 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001452 [exp] 1275 / 0 AT4G02060 1224 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10002427 [exp] 1275 / 0 AT4G02060 1223 / 0.0 PROLIFERA, Minichromosome maintenance (MCM2/3/5) family protein (.1), Minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10038384 [exp] 335 / 3e-103 AT5G44635 1257 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10036244 [exp] 333 / 1e-102 AT5G44635 1262 / 0.0 MINICHROMOSOME MAINTENANCE 6, minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10028795 [exp] 329 / 4e-101 AT2G16440 1255 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10017491 [exp] 327 / 2e-100 AT2G16440 1225 / 0.0 MINICHROMOSOME MAINTENANCE 4, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10025389 [exp] 326 / 3e-100 AT5G46280 1096 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10015267 [exp] 334 / 5e-100 AT5G46280 1098 / 0.0 MINICHROMOSOME MAINTENANCE 3, Minichromosome maintenance (MCM2/3/5) family protein (.1) Lus10009052 [exp] 318 / 9e-94 AT1G44900 1263 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2) Lus10009683 [exp] 295 / 3e-85 AT1G44900 963 / 0.0 MINICHROMOSOME MAINTENANCE 2, minichromosome maintenance (MCM2/3/5) family protein (.1), minichromosome maintenance (MCM2/3/5) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00493 [poplar] [flax] MCM MCM P-loop domain CL0023 [poplar] [flax] PF14551 [poplar] [flax] MCM_N MCM N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G121000.1 pacid=42763021 polypeptide=Potri.014G121000.1.p locus=Potri.014G121000 ID=Potri.014G121000.1.v4.1 annot-version=v4.1 ATGAAACCCGTTCGCTTCGAAGAAGAGAGAAATCTCGCCAAGGATTTCCTTTCAAATTTCGCCGACGCAAATGGCGAATCTAAATACATGAACATCCTTC AAGATGTTGCAAATCATAAGTTCCGCGCTGTCCAGATCGATCTCGAAGACCTCATTAATTATAAGGACTTGGATGAGGAATTCCTTAGACGTGTTACTGA GAACACACGTCGATATGTTGGGATTTTTGCTGATGCTATCGACGAAGTGTTGCCAAAGCCGACTGAAGCATTTCCGGATGATGACCATGATATTTTAATG ACACAGAGGTCTGAGGATGCAACTGAGAACGTTGAAGGTTCTGATGCGAATCAGAAGATGCCTTCAGAGATCAAGCGTTACTTTGAAGTTTATATTAGAG CACCTTCAAAAGGGCGGCCATCTACCATTAGAGAGGTCAAGGCTTCAAACATTGGCCAGCTTGTGAAGATATCTGGTATTGTGACACGTTGTTCAGATGT TAAACCACTGATGCAGGTAGCTGTGTATACATGTGAAGAATGTGGTTTTGAAATTTACCAGGAAGTAACCGCTCGAGTCTTCATGCCCTTGTTTGAGTGC CCAACTAAGCGCTGCAAAACAAACAACACAAAGGGGAACCTCATTCTTCAACTCAGAGCATCAAAGTTTCTGAAGTTTCAGGAGGCCAAAATGCAAGAGC TAGCAGAACATGTTCCAAAAGGCCACATTCCACGATCGATGACTGTTCATTTCAGAGGAGAACTCACAAGAAAGGTAGCACCAGGTGATGTCGTTGAATT ATCAGGGATCTTCCTTCCAATTCCTTACACTGGTTTCAGAGCAATGCGTGCTGGCTTAGTTGCCGACACATTTTTGGAGGCCATGTCTGTTACTCATTTC AAGAAAAAATATGAAGAGTATGAACTTAGAGGAGACGAGGAAAAGCAGATTGCAAGTCTGGCTGAGGATGGAGATATCTACAATAAGTTGGCACAATCAT TGGCACCTGAAATCTATGGACATGAAGATATTAAAAAGGCTTTACTTCTTCTTCTCGTGGGTGCTCCTCATCGAAAGTTAAAGGATGGGATGAAGATTAG AGGAGATTTACATTTATGCTTGATGGGTGATCCTGGTGTTGCCAAAAGTCAGCTTCTGAAGCATATAATAAATGTAGCGCCCAGGGGAGTGTACACAACT GGCAAAGGGAGCAGTGGAGTTGGTCTAACTGCTGCTGTTCAGAAAGATCCAGTTACAAACGAGATGGTCCTGGAAGGAGGAGCATTGGTTCTGGCTGATA TGGGTATATGTGCTATTGACGAGTTTGACAAGATGGATGAATCAGATCGTACAGCAATTCATGAAGTTATGGAGCAGCAAACTGTCAGCATTGCCAAGGC TGGGATTACAACATCACTCAATGCGAGAACTGCTGTTCTTGCTGCTGCTAATCCTGCCTGGGGAAGATATGATCTACGGAGAACTCCAGCTGAAAATATC AATCTACCTCCTGCTCTCCTATCACGATTTGATCTTCTGTGGTTGATCCTTGATCGAGCAGATATGGACAGCGACCTTGAAATGGCTAGGCACGTTGTTT ACGTGCACCAGAATAAAGAATCTCCTGCTCTTGGTTTCACTCCACTTGAACCATCTATTCTCCGGGCATATATTTCTACTGCAAGAAGATTGTCCCCTTA TGTGCCTAAGGAACTGGAGGAATACATTGCTACTGCATACTCGGGCATGCGGCAAGAAGAAGCTAAATCGAATACTCCTCATTCCTACACGACTGTCCGA ACTCTGCTTAGCATACTCCGCATATCAGCTGCCTTGGCAAGACTTAGATTTTCTGAAAGTGTGGCTCAGAGTGATGTGGATGAGGCACTGAGGTTAATGC AGATGTCAAAATTCTCTTTATATTCTGATGATCGTCAGAGATCTGGTCTGGATGCCATCTCTGACATCTATTCAATCTTGCGGGATGAAGCTGCAAGAGC CAATAAAATGGATGTGAGCTATGCCCATGCACTCAACTGGATTTCTAGAAAGGGATACAGTGAAGCGCAGTTGAAAGAATGTTTAGAGGAATATGCATCC TTGAATGTCTGGCAGATACATCCCCACACCTTTGATATTCGATTTATCGATGCCTGA
AA sequence Show only first row Show all	>Potri.014G121000.1 pacid=42763021 polypeptide=Potri.014G121000.1.p locus=Potri.014G121000 ID=Potri.014G121000.1.v4.1 annot-version=v4.1 MKPVRFEEERNLAKDFLSNFADANGESKYMNILQDVANHKFRAVQIDLEDLINYKDLDEEFLRRVTENTRRYVGIFADAIDEVLPKPTEAFPDDDHDILM TQRSEDATENVEGSDANQKMPSEIKRYFEVYIRAPSKGRPSTIREVKASNIGQLVKISGIVTRCSDVKPLMQVAVYTCEECGFEIYQEVTARVFMPLFEC PTKRCKTNNTKGNLILQLRASKFLKFQEAKMQELAEHVPKGHIPRSMTVHFRGELTRKVAPGDVVELSGIFLPIPYTGFRAMRAGLVADTFLEAMSVTHF KKKYEEYELRGDEEKQIASLAEDGDIYNKLAQSLAPEIYGHEDIKKALLLLLVGAPHRKLKDGMKIRGDLHLCLMGDPGVAKSQLLKHIINVAPRGVYTT GKGSSGVGLTAAVQKDPVTNEMVLEGGALVLADMGICAIDEFDKMDESDRTAIHEVMEQQTVSIAKAGITTSLNARTAVLAAANPAWGRYDLRRTPAENI NLPPALLSRFDLLWLILDRADMDSDLEMARHVVYVHQNKESPALGFTPLEPSILRAYISTARRLSPYVPKELEEYIATAYSGMRQEEAKSNTPHSYTTVR TLLSILRISAALARLRFSESVAQSDVDEALRLMQMSKFSLYSDDRQRSGLDAISDIYSILRDEAARANKMDVSYAHALNWISRKGYSEAQLKECLEEYAS LNVWQIHPHTFDIRFIDA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Potri.014G121000 [exp]	0	1	PRL.2
AT5G65120			unknown protein		Potri.007G090500 [exp]	2.64	0.9430
AT2G41450			N-acetyltransferases;N-acetylt...		Potri.006G045100 [exp]	3.00	0.9391
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Potri.009G121500 [exp]	4.89	0.9428
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Potri.001G050300 [exp]	5.74	0.9159
AT1G26840		ORC6, ATORC6	ARABIDOPSIS THALIANA ORIGIN RE...		Potri.011G083700 [exp]	7.61	0.8985
AT4G16970			Protein kinase superfamily pro...		Potri.001G151900 [exp]	7.74	0.9230
AT3G19590		BUB3.1	BUB \(BUDDING UNINHIBITED BY B...		Potri.009G089200 [exp]	9.59	0.9309
AT2G01120		ORC4, ATORC4	origin recognition complex sub...		Potri.008G126300 [exp]	12.00	0.9125
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.014G021100 [exp]	13.41	0.9187	CYCA3.2
AT5G06590			unknown protein		Potri.016G064200 [exp]	13.56	0.9202

Compare expression of checked genes

Potri.014G121000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.