Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47410 1506 / 0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1.2) AT5G49430 1425 / 0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) AT5G52820 75 / 2e-13 WD-40 repeat family protein / notchless protein, putative (.1) AT3G49660 74 / 2e-13 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 69 / 1e-11 PRL1 pleiotropic regulatory locus 1 (.1) AT3G16650 68 / 3e-11 Transducin/WD40 repeat-like superfamily protein (.1) AT2G41500 66 / 2e-10 EMB2776, LIS LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) AT5G25150 61 / 5e-09 TAF5 TBP-associated factor 5 (.1) AT4G02730 59 / 1e-08 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT5G16750 59 / 2e-08 TOZ TORMOZEMBRYO DEFECTIVE, Transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G142700 [exp] 1195 / 0 AT5G49430 1753 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) Potri.008G106800 [exp] 1183 / 0 AT5G49430 1729 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) Potri.005G148500 [exp] 76 / 4e-14 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.009G058000 [exp] 72 / 2e-12 AT5G52820 811 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1) Potri.007G009500 [exp] 69 / 4e-12 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 67 / 7e-11 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.002G051900 [exp] 65 / 1e-10 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.018G020200 [exp] 66 / 2e-10 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G250200 [exp] 62 / 1e-09 AT1G52360 466 / 3e-157 Coatomer, beta' subunit (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037748 [exp] 1076 / 0 AT5G49430 1224 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) Lus10016882 [exp] 892 / 0 AT5G49430 995 / 0.0 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) Lus10016881 [exp] 341 / 2e-98 AT5G49430 453 / 3e-138 WD40/YVTN repeat-like-containing domain;Bromodomain (.1) Lus10003487 [exp] 76 / 3e-14 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039636 [exp] 71 / 2e-12 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10021059 [exp] 71 / 6e-12 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10014674 [exp] 69 / 9e-12 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 70 / 1e-11 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10006916 [exp] 68 / 2e-11 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10039597 [exp] 68 / 3e-11 AT5G52820 792 / 0.0 WD-40 repeat family protein / notchless protein, putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF00439 [poplar] [flax] Bromodomain Bromodomain
Representative CDS sequence Show only first row Show all	>Potri.014G121100.1 pacid=42762720 polypeptide=Potri.014G121100.1.p locus=Potri.014G121100 ID=Potri.014G121100.1.v4.1 annot-version=v4.1 ATGGATATCTGGAATCGCTCATCTTCTGGTGGTGCTTCTTCCATTGGCAAGCCACTGTTGGATTTTTCAAATACGGTGATGGAGAAGGCTCATTTTGAAC AACAAGGGAGAGTTCGTGTTAATGAGAAAAAAATAGATGTAGACCATAGAGAAATTTACTTTTTGATTATGCATTTTCTATCTTCCGGGCCATTCCATAG GACTTTTAGACAATTTCAGGATGAAGTTTTAGGACATGAGCTTCTACCAAGAAGATATCATGCTTGGTTTTCAAGAAGTGGTGCACATAATGGGAATGAT AACAATGATGGTGTCTCTCTTCCTTTAAGTTATGATAAATTGGTGGAAAGGTATCCTCATGTTGAGAAGGATCATTTGGTAAAGCTTCTGAAACAATTGC TGCTGAACACAGATTCTATGTTTGGCGAGGCTGGAAGAAATACTCTAAATGCAGCTCATGTTCCTACAATACTGGGATCTGGTTCTTTTTCGCTTCTTGA TTGTGAGAAGAGTATGCATAAGCAAGCTATGCCCCTGCCAGCAAACCTGCGTTGGCCCCACATGCAGATTGATCAGGTGCATGGGCTGAGTTTAAGGGAA CTCGGAGGTGGTTTTGCAAAGCACCATCGTGCTCCATCCATTCGCTATGCTTCTTATGCCATTGCTAAGCCATTGACCATGGTGCAAAAGATGCAAAATA CAAAGAAGTTAAGGGGACACCGTACTGCTGTCTATTGTGCAATATTTGATCGCTCAGGAAGGTATGTTATTACTGGTTCGGATGATCGTCTTGTCAAGAT TTGGTCAATGGAGACTGCATTTTGCCTGGCCAGCTGCAGAGGACACGAAGGTGACATTACTGACTTGGCTGTAAGTTCCAACAATGCTTTAGTGGCATCT GCTTCCAATGATTTTGTCATTCGAGTGTGGCGCTTGCCAGATGGGATGCCCATTTCAGTCTTGCAGGGGCACACTGGAGCTGTTACTGCCATTGCATTTA GTCCCAGGCTTGGCTCTGTGTATCACCTTTTATCGTCATCAGATGATGGAACTTGTCGAGTTTGGGATGCTAGATATTCCCATTGTAGTCCACGAATTTA TGTTCCAAAGCCTTCAGATGCTCTTACTGGTAAGAGCAGTGGTACTTTTAGCAATGGACCTTCCTCGAGTAATGGTCCACAGAGCAATCAGATATTGTGT TGTGCTTACAATGCCAATGGAACTGCTTTTGTCACTGGAAGCTCTGATACGTATGCTAGGGTTTGGAATGCATGTAAATCTAACACAGATGAGTCAGAAC AACCTATACATGAGATGGATGTATTATCCGGCCATGAGAACGATGTCAATTATGTTCAATTCAGTGGCTGTGCTGTGGCTCCAAGATCTTCAATGTCTGA CACTTTGAAGGAGGATAGTGTTCCGAAATTTAAAACCTCCTGGTTCTGTCATGACAAAATAGTCACCTGCTCCCGTGATGGCAGTGCAATCATATGGAGA CCTATATCACGGAGATCGCATGGAAAATCTGTACGTTGGACAATGTCTTATCATCTGAAAGTTCCACCTCCTCCACTACCTCCACAACCTCTTCGGGGAG GACCACGCCAAAGAATTCTTCCAACTCCTCGTGGTGTTAATATGATTGTGTGGAGTCTTGATAAGCGCTTTGTCTTAGCAGCTGTTATGGATTGCAGAAT ATGTGTTTGGAATGCTGCTGATAGTAGCTTAGTGCATTCTTTGACTGGCCATACCGAGTCTTCTTATGTTTTAGATGTTCATCCTTTCAATCCGCGGATA GCTATGAGTGCTGGGTATGATGGTCAAATGATAGTGTGGGATATATGGGAGGGCATTCCTATTCGCACATATGAAATTGGTCATGTCAAGTTGATTGATG GGAAGTTTTCTCCGGATGGGACATCTGTTGTGCTTTCTGATGATGTTGGCCAAATATACTTGCTAAACACAGGCCAGGGTGAGTCTCAAAAGGATGCCAA ATATGACCAGTTTTTCCTTGGGGATTATAGACCCCTTATCCGTGATGCTGCAGGAAATGTCCTCGATCAGGAGACACAACTGGCTCCGCATCGAAGGAAC ATTGAAGATCCTCTGTGTGACTCAAGTATGATTCCATACCCAGAACCTTATCAGACCATGTTTCAGCAACGTCGACTTGGTGCACTAGGAGTTGAGTGGC GTCCTTCATCCATCAAATTTGCTGTTGGTCCGGATATTGGTTTAGGCCAGGATTATCAAATGCCTCCATTGGAAGATTTAGAAAGAATGTTTGACCCACT GCCTGAGTTCATGGATGCCATTTACTGGGAACCAGAAAATGAAGTCATAAGTGACAACACTGATTCTGAGTATAATGTTGCAGAGGAATGCACCAGTGAG GAGGAGCAGGGTAGTTTGTGTTTCAGCTCTCCCAGCGATCCCAATTGTAGTACAGGGGACACTGATGCTGAACACAGTAAAAAGGATAGCATTCGCAGGT CAAGGAGGAGAAAACACAAGACTGAAGCTGAACTAATGACATCTTCTGGGAGGCGATTGAAGAAACGAAACATGGATGAGCGTGATGGCTCATTATCTGG AAGTAATGGAGGTAAGAAACTGAAAGGTGTTCAGAAAGTCTCTAAGAGGAAGTCTTCCAAAGCAAAGTCATCAAGACCTCAGCGTGTTGCTGCCCGCAAT GCTCGAAACATGCTTTCCAAAATTACTGGAACATCTACAGATGAAGATGATGATGATTCAGAAGACGATACATCCAACTGTGAGTCAGGGCTTCAAGATT TGACCGTCCAAAACAACAGAGGAGATGGATACTTGCAGAATGCACAAGAAAAATGTACGAAGGAAGATAAACTTGTTTTGGTTGAGGATATGGCCAAGCC TCCTGAACTCCCTGAATCTCAATCAGTTTTGGGAAATAGGAAAAAAATAGTCTTGAAGTTCTCATTACGTGACTCCAAGAAGCCTGTGTCTCCAGAAGAG AGCAGACTCAATGGTGAAAATCATATTGATTTTGTTAACCTATCTTCTGGACCTATTGAAGAAAATAACATCAAGATAAGCTCTGAAGATCCAGGGGCAT CTTCTTCGAATGTGTCTGGCTTTGGACTGTCTCAATACCACACTAGAGGTGATCTTACTGGTGCTTCCACAGCTTCAAGCAATGAAATTTGTAATGAGGG AGACAAAAATTGGTCCAGATCTGATAAACACAGTTGTTGTGACCCAGTAGATATAAGTGAAGTTTTTGGTACAAACCATTCTCAGGAGTTGAAAGTGGAC CCTCCACCAAAGATAACAAGGTTAAAAATAAAAACAAAAGCAATTTCGAAGGATTCAAGCAGTCCCTCTAAATTGAAATATTCGAGAACAGGTGGTGACT TAACTAGCAATGGAGGTGATGTAATGTCTGAAACTCCCTCTTATCTGGGACAGGATAAAATATCAGGAGTACCAGAGAGGGGTGGAGAAAGTTTGGGCAG ATCAATTTCTCTGCATGGTGTAAACAAAAGGGAAAAGACACACAAGGCTAGATCTGATTTAAAAGGTTTTGATAGTGTTATAAAAGAAAATTCCTCACCA GCAAATGACCATTGTGATTCTGGAACTGATCTCTCTGAAGCTGAAAATGGTGATGCAATACGTAGAACAAGATCCATGAAGATGAAGGCAACCCAGCGGG AACCAAGTGCTCAAAATCATAACCTTGGGGTGAAAATGGGCCATGAATTGGTTGGGATGTCAAAGAATGCTGCAGGTGATGAGTTCCTATCTGAAGAGTG GGTGTCAAGTTCGAAAACAGCAGTTAGACCAAGGTCGGCTAAAAACAAGAGAGGAAAGTATTCTGATAATGATACGAGATTTATTAGAAGAGAATCAAAT CAACCCATAAGAAAATTATCATGGTTAAGCTTGTCAAAGCATGAGGATGGATACCGTTATATCCCCCAGTTGGGCGACGAAGTTGTTTATTTGAGACAGG GCCACCAAGAGTATATTGATTTATATAGTCTACGAGAAAAAGGTCCTTGGAGTTTAATCAAGGGACGCCTAAGTGCAGTGGAAATTTGCAAGGTAGAAGA CCTTGATTATGCCATAGTTCCTGGTTCGGGGGATAGCTGCTGTAAAATCACACTTGGATTTGTAGATCCTTCATCTGTTGCTTTTGGCAAAGCATTCAAG CTGACCCTGCCTGAACTGATTGATTTTCCTGATTTTATTGTTGAAAAAACACGATATGATGCTTCCATCAATAGAGATTGGAATACCAGGGATAGATGTG AGGTGTGGTGGAGGAATGAGAATGGGGAAGGTGGTGAATGGTGGGAAGGGGATATTGTTTCTGTGCAGGCAAAATCTGTTGACTTTCCGGATAGTCCTTG GGAGAGATATGAAGTCATATACACGTCTGATCCAACTTTACACAAACACAGTCCATGGGAATTGCATGATCTTGGCATTCCATGGGAGCACCCCCATATA GATTTTGATATAACAAATAGACTACTATCTTTGTTCAATAAATTAGAGCTATCAGCAAAGAAAAATCAGGATTCTTACGGAATTCAAAAATTGAATGAGG CTTCTCATAAGTGGGATTTCTTTAACAGATTTTCAGTACCTCTGTGTCCTGAAATTATCCGGTCGAGGTTAGAAAGCAACTATTATCGGAGCTTAGAAGC GGTGAAGCATGACATACAGGTGATGATGAAAAATGCCCAAGATTTTTTTGAGTTAAGCGCTGAGCTATCACACAAAATGAAGCGCCTCTCTGAATGGTTT ACAAGGAAATTATCAAAGATGTTGGAAGTCCAATAA
AA sequence Show only first row Show all	>Potri.014G121100.1 pacid=42762720 polypeptide=Potri.014G121100.1.p locus=Potri.014G121100 ID=Potri.014G121100.1.v4.1 annot-version=v4.1 MDIWNRSSSGGASSIGKPLLDFSNTVMEKAHFEQQGRVRVNEKKIDVDHREIYFLIMHFLSSGPFHRTFRQFQDEVLGHELLPRRYHAWFSRSGAHNGND NNDGVSLPLSYDKLVERYPHVEKDHLVKLLKQLLLNTDSMFGEAGRNTLNAAHVPTILGSGSFSLLDCEKSMHKQAMPLPANLRWPHMQIDQVHGLSLRE LGGGFAKHHRAPSIRYASYAIAKPLTMVQKMQNTKKLRGHRTAVYCAIFDRSGRYVITGSDDRLVKIWSMETAFCLASCRGHEGDITDLAVSSNNALVAS ASNDFVIRVWRLPDGMPISVLQGHTGAVTAIAFSPRLGSVYHLLSSSDDGTCRVWDARYSHCSPRIYVPKPSDALTGKSSGTFSNGPSSSNGPQSNQILC CAYNANGTAFVTGSSDTYARVWNACKSNTDESEQPIHEMDVLSGHENDVNYVQFSGCAVAPRSSMSDTLKEDSVPKFKTSWFCHDKIVTCSRDGSAIIWR PISRRSHGKSVRWTMSYHLKVPPPPLPPQPLRGGPRQRILPTPRGVNMIVWSLDKRFVLAAVMDCRICVWNAADSSLVHSLTGHTESSYVLDVHPFNPRI AMSAGYDGQMIVWDIWEGIPIRTYEIGHVKLIDGKFSPDGTSVVLSDDVGQIYLLNTGQGESQKDAKYDQFFLGDYRPLIRDAAGNVLDQETQLAPHRRN IEDPLCDSSMIPYPEPYQTMFQQRRLGALGVEWRPSSIKFAVGPDIGLGQDYQMPPLEDLERMFDPLPEFMDAIYWEPENEVISDNTDSEYNVAEECTSE EEQGSLCFSSPSDPNCSTGDTDAEHSKKDSIRRSRRRKHKTEAELMTSSGRRLKKRNMDERDGSLSGSNGGKKLKGVQKVSKRKSSKAKSSRPQRVAARN ARNMLSKITGTSTDEDDDDSEDDTSNCESGLQDLTVQNNRGDGYLQNAQEKCTKEDKLVLVEDMAKPPELPESQSVLGNRKKIVLKFSLRDSKKPVSPEE SRLNGENHIDFVNLSSGPIEENNIKISSEDPGASSSNVSGFGLSQYHTRGDLTGASTASSNEICNEGDKNWSRSDKHSCCDPVDISEVFGTNHSQELKVD PPPKITRLKIKTKAISKDSSSPSKLKYSRTGGDLTSNGGDVMSETPSYLGQDKISGVPERGGESLGRSISLHGVNKREKTHKARSDLKGFDSVIKENSSP ANDHCDSGTDLSEAENGDAIRRTRSMKMKATQREPSAQNHNLGVKMGHELVGMSKNAAGDEFLSEEWVSSSKTAVRPRSAKNKRGKYSDNDTRFIRRESN QPIRKLSWLSLSKHEDGYRYIPQLGDEVVYLRQGHQEYIDLYSLREKGPWSLIKGRLSAVEICKVEDLDYAIVPGSGDSCCKITLGFVDPSSVAFGKAFK LTLPELIDFPDFIVEKTRYDASINRDWNTRDRCEVWWRNENGEGGEWWEGDIVSVQAKSVDFPDSPWERYEVIYTSDPTLHKHSPWELHDLGIPWEHPHI DFDITNRLLSLFNKLELSAKKNQDSYGIQKLNEASHKWDFFNRFSVPLCPEIIRSRLESNYYRSLEAVKHDIQVMMKNAQDFFELSAELSHKMKRLSEWF TRKLSKMLEVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47410			WD40/YVTN repeat-like-containi...		Potri.014G121100 [exp]	0	1
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Potri.008G192200 [exp]	1.00	0.8878	SNT901
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.004G104201 [exp]	2.44	0.8634
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.019G054600 [exp]	2.82	0.8689
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.016G064100 [exp]	4.24	0.8270	Pt-UBP12.1
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Potri.008G035200 [exp]	4.47	0.8536
AT1G55350		EMB80, ATDEK1, ...	EMBRYO DEFECTIVE 80, embryo de...		Potri.003G221100 [exp]	5.29	0.8599
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Potri.001G274900 [exp]	7.00	0.8416
AT3G17850			Protein kinase superfamily pro...		Potri.015G035600 [exp]	9.16	0.8169
AT3G12810		CHR13, SRCAP, P...	PHOTOPERIOD-INDEPENDENT EARLY ...		Potri.001G207700 [exp]	11.66	0.8345
AT5G42950			GYF domain-containing protein ...		Potri.002G262300 [exp]	12.48	0.8471

Compare expression of checked genes

Potri.014G121100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.