Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47420 526 / 0 DIM1A adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1) AT5G66360 296 / 3e-98 DIM1B adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2) AT1G01860 103 / 1e-24 PFC1 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G018900 [exp] 258 / 3e-83 AT5G66360 436 / 8e-153 adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2) Potri.014G077100 [exp] 108 / 9e-27 AT1G01860 437 / 1e-154 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Potri.006G264101 [exp] 78 / 2e-17 AT5G66360 120 / 1e-33 adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017864 [exp] 567 / 0 AT2G47420 529 / 0.0 adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1) Lus10034669 [exp] 564 / 0 AT2G47420 527 / 0.0 adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1) Lus10041797 [exp] 248 / 1e-79 AT5G66360 436 / 8e-153 adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2) Lus10009319 [exp] 107 / 5e-25 AT1G01860 417 / 4e-137 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Lus10015847 [exp] 64 / 9e-12 AT1G01860 216 / 6e-70 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description
Representative CDS sequence Show only first row Show all	>Potri.014G121200.1 pacid=42762604 polypeptide=Potri.014G121200.1.p locus=Potri.014G121200 ID=Potri.014G121200.1.v4.1 annot-version=v4.1 ATGGCAGGCGGTAAGATAAGAAAAGAGAAGCCATCATCACGGGGGGCACCTTCCTCAAATCACTACCAAGGAGGCATATCCTTCCACAAATCCAAAGGAC AACACATCCTCAAGAACCCTCTACTTGTTGACTCCATAGTCCAAAAATCAGGCATCAAGAGCACCGACGTTGTTCTTGAGATTGGTCCTGGTACTGGAAA TCTCACCAAGAAACTTCTCGAAGCTGGCAAAATGGTTGTTGCTATTGAGCTCGACCCTCGCATGGTTCTCGAGCTTCAACGCCGCTTTCAAGGCACCGCT TTCTCTAATCGCTTAAAGGTGATCCAGGGTGATGTGCTAAAGACAGACCTTCCTTATTTCGATATATGTGTGGCAAATATCCCTTATCAGATATCCTCAC CCCTCACGTTCAAATTATTGAATCATCAACCTTCCTTCAGGTGTGCCATCATTATGTTTCAGAGAGAATTTGCTATGAGACTTGTTGCTCAGCCAGGTGA TACCTTATACTGTCGTCTTTCTGTTAATACCCAACTCTATGCTAGAGTCTCCCATCTTCTCAAAGTTGGGAAGAACAATTTCAGGCCTCCTCCCAAGGTG GATTCCTCTGTTGTTCGAATTGAGCCTAGGAAACCACGTCCCCAGGTGAATCCTAAGGAATGGGATGGATTCATAAGGATTTGTTTCATTCGAAAGAACA AGACACTTGGTTCTATTTTTAGGATAAAAAATGTCCTCTCCATGCTTGAAAAGAACTACAAGACCCTTCAGGCGCTGCAGCAATTGCAAAATGGTTCCTC GGGGAGTACCAATGCTGAGATGGACATTTTGGGACTGGGAGAATCTAAGGAGGATCGAAGCATGGACATGGATGATGGAACGGATGACGAAATGGAGGTG GAGGATGGTGATGCAGACGGTGAGGCCTCTGAATTCAAGCAAAAGGTTTTGGCTGTGTTGAAAGAGAGAGATTATTCTGAAAAGAGGTCATCCAAACTCT CGCAAGAGGAGTTCTTACACTTGCTCTCTCAGTTCAATATGGCTGGCATACACTTCTCCTGA
AA sequence Show only first row Show all	>Potri.014G121200.1 pacid=42762604 polypeptide=Potri.014G121200.1.p locus=Potri.014G121200 ID=Potri.014G121200.1.v4.1 annot-version=v4.1 MAGGKIRKEKPSSRGAPSSNHYQGGISFHKSKGQHILKNPLLVDSIVQKSGIKSTDVVLEIGPGTGNLTKKLLEAGKMVVAIELDPRMVLELQRRFQGTA FSNRLKVIQGDVLKTDLPYFDICVANIPYQISSPLTFKLLNHQPSFRCAIIMFQREFAMRLVAQPGDTLYCRLSVNTQLYARVSHLLKVGKNNFRPPPKV DSSVVRIEPRKPRPQVNPKEWDGFIRICFIRKNKTLGSIFRIKNVLSMLEKNYKTLQALQQLQNGSSGSTNAEMDILGLGESKEDRSMDMDDGTDDEMEV EDGDADGEASEFKQKVLAVLKERDYSEKRSSKLSQEEFLHLLSQFNMAGIHFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47420		DIM1A	adenosine dimethyl transferase...		Potri.014G121200 [exp]	0	1
AT3G51270			protein serine/threonine kinas...		Potri.017G001100 [exp]	1.00	0.8941
AT1G52980		AtNug2	nuclear/nucleolar GTPase 2, GT...		Potri.001G402500 [exp]	2.64	0.8254
AT5G41190			unknown protein		Potri.003G124700 [exp]	3.16	0.8759
AT1G16280		SWA3, AtRH36	SLOW WALKER 3, Arabidopsis tha...		Potri.008G084700 [exp]	8.94	0.8358
AT2G19640		SDG39, ASHR2	SET DOMAIN PROTEIN 39, ASH1-re...		Potri.001G071700 [exp]	9.00	0.8172
AT5G22100			RNA cyclase family protein (.1...		Potri.001G216400 [exp]	9.53	0.8066
AT3G54130			Josephin family protein (.1)		Potri.006G095700 [exp]	10.77	0.7881
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.019G034300 [exp]	11.48	0.8513
AT5G16930			AAA-type ATPase family protein...		Potri.011G143300 [exp]	12.24	0.8263
AT4G07410		PCN	POPCORN, Transducin family pro...		Potri.014G014900 [exp]	12.64	0.8127

Compare expression of checked genes

Potri.014G121200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.