Plant FIBer expression Database

Potri.014G121300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G47820 75 / 3e-19 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10035088
[exp]
105 / 4e-31 AT1G47820 76 / 4e-19 unknown protein
Lus10031924
[exp]
88 / 6e-24 AT1G47820 73 / 5e-18 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G121300.1 pacid=42763381 polypeptide=Potri.014G121300.1.p locus=Potri.014G121300 ID=Potri.014G121300.1.v4.1 annot-version=v4.1
ATGGCGGGACAAGCTGCTGACAGCATTAATCAAGGGCTTCGTGTTAAAGCAACGCTTAAACTTGGGTCAGAATTGTATGCCGTCAATTCATGCAATGGTA
ATACTGTTTCTGAGCAATTGGTTTCCATGAAAGAGCAGAGCATGAGCATTTTGAAGGAATTCATCACTAAACATAATGTTCCTCATGATGTCCCTGATGA
AATAGCTGAAAGCTCTTCAGAAGATGAAGTCCTTGAGAATCCTCGAGTTAAAACGAAGAAATCAAAACTTACTTGA
AA sequence
>Potri.014G121300.1 pacid=42763381 polypeptide=Potri.014G121300.1.p locus=Potri.014G121300 ID=Potri.014G121300.1.v4.1 annot-version=v4.1
MAGQAADSINQGLRVKATLKLGSELYAVNSCNGNTVSEQLVSMKEQSMSILKEFITKHNVPHDVPDEIAESSSEDEVLENPRVKTKKSKLT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G47820 unknown protein Potri.014G121300
[exp]
0 1
AT3G16640 TCTP translationally controlled tum... Potri.008G221200
[exp]
2.00 0.8515
AT1G02780 EMB2386 embryo defective 2386, Ribosom... Potri.004G078000
[exp]
3.87 0.8207 Pt-RPL19.3
AT1G07830 ribosomal protein L29 family p... Potri.014G111100
[exp]
4.00 0.7931
AT1G18335 Acyl-CoA N-acyltransferases (N... Potri.012G041400
[exp]
4.00 0.8175
AT4G01100 ADNT1 adenine nucleotide transporter... Potri.014G095400
[exp]
4.35 0.7526
AT4G33100 unknown protein Potri.006G224400
[exp]
4.89 0.7799
AT3G01740 Mitochondrial ribosomal protei... Potri.001G335600
[exp]
6.70 0.8123
AT3G60480 unknown protein Potri.014G054300
[exp]
9.89 0.7980
AT5G50810 TIM8 translocase inner membrane sub... Potri.012G103400
[exp]
10.95 0.7871
AT4G22220 ATISU1, ISU1 SufE/NifU family protein (.1) Potri.015G077500
[exp]
12.00 0.8061

Potri.014G121300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.