Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62470 737 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 736 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 733 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G77360 255 / 4e-77 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G71060 238 / 1e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G73400 234 / 7e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49730 230 / 1e-66 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G26500 225 / 5e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65820 219 / 1e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15010 208 / 5e-59 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G191200 [exp] 449 / 1e-155 AT3G62470 382 / 3e-130 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098600 [exp] 258 / 7e-78 AT1G73400 670 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G181900 [exp] 246 / 3e-74 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G114700 [exp] 241 / 2e-71 AT1G71060 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G176100 [exp] 231 / 9e-67 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 218 / 5e-63 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G053600 [exp] 211 / 4e-60 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G086100 [exp] 206 / 1e-58 AT1G26500 639 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G115500 [exp] 202 / 5e-57 AT3G15200 546 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003461 [exp] 737 / 0 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015741 [exp] 730 / 0 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10034419 [exp] 270 / 3e-82 AT1G73400 684 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019141 [exp] 268 / 3e-81 AT1G73400 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10001588 [exp] 249 / 1e-73 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001633 [exp] 232 / 4e-68 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011566 [exp] 221 / 2e-63 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021991 [exp] 218 / 2e-62 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030887 [exp] 208 / 1e-59 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 206 / 8e-59 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.014G121400.2 pacid=42762278 polypeptide=Potri.014G121400.2.p locus=Potri.014G121400 ID=Potri.014G121400.2.v4.1 annot-version=v4.1 ATGATACGGTGCTGCTTGCACTCCAATTGGCATTCAAGTTTCAAAGGCCAACTCTACTCCAACACAAAGTTAATCCCCCTCTATCAGAGACAAGGGCGAG GAGGAGGAGGAGGACAATGTAGCAGAGAGCAAGTGTGCCTCCCGGGTTGTAGCTCTCTGCCCTTCTCTCATTCGTGTTGTTCTTCTCGTGATCGTAGAGT TGGTCATACTCACGGTCAAATCCCATTTGTTTGGCCATACTCCTCTGCACCAAGAACAATTTTACAAGAAAAACTCTCCCGAATTCTAAACTCAACAGCT AGTAATAAATCCAAAACTTCTTTACTGCCCAGTTTTACTATACAGGGAAAAGTTTCAGAGCTAAGTGTTAGGTGGTTTTCTAGCTCCAGCAATGATGATA CAGATTCCGATGCTGAAAATGATGAGAATGATGAGAGTGATAATTGTGAAAGAGAAAACAAAGGTGCTATTGTTAAATCAACTGCAGATCCTGCTGAGGT TCATAAGGTATGCAAGGTGATTGATGAGTTGTTTGCATTGGACCACAACATGGAGGCAGTTCTTGATGAATGTGGGATCAATTTATCACATGACCTGGTC ATAGAGGTGTTGGAAAGATTCCGTCATGCTAGAAAACCGGCTTTCCGATTCTTCTGTTGGGCAGCGGAGAAGCCAGGTTTTGTCCATGATTCAAGGACTT ACCATTCGATGATGATCATACTTGCTAAGGCTAGACAGTTTGAGACTATGATGTCAATGCTTGAAGAGATGGGTGAAAAAAGGCTTTTGACGTTGGACAC ATTTTCCATTGCAATGAGAGCTTTTGCTGCTGCAAAGGAGAGGAAAAAGGCTGTTGGTATTTTTGAGTTAATGAAGAATCACAAATATAGAGTGGGTGTT GAGACCATTAATGCTCTGCTTGATAGTCTTGGGAGGGCCAAGCTTGGGAAAGAAGCTCAGGCACTATTTGGGAAGTTGGAAGGTAGGTTTACGCCAAATT TGAGGACATATACTGTATTGCTTAATGGATGGTGCAGGGTGAAGAATTTAATGGAGGCAGGGAGGATTTGGAACGAGATGCTTGATGAGGGTTTTAAGCC TGATATTGTCACCCATAATATTATGCTTGAAGGGTTGTTAAGGAGTAAAAAGAGGTCTGATGCAATCAAGTTCTTTGAGGTCATGAAAGCCAAGGGCCCA TCACCTGATGTTCGAAGCTATACAATTTTGATCCGGGATCTATGCAAACAAACTAAGATGAAAGAGGCAGTTGGATATTTTTATGAGATGGTTGATTCCG GTTGTCATCCTGATGCTGCAGTTTACACATGTTTGATGACAGGGTATGGGAATCATAAGAGGATGGACATGGTTTATGAATTGTTGAAGGAGATGAAAGA AAAGGGCTGTCCACCTGATGGGAAAACTTATAATGCCCTTATCAAGTTGATGACCAGCCAGAGAATGCCAGATGATGCAGTGAGGATTTACAAGAAGATG ATTCAAAATGGAATTGAACCTTCAATCCACTCTTACAATATGATAATGAAATCTTACTTTCGAATAAGAAACTATGAAATGGGTCATGCCGTTTGGGATG AAATGAGTAAGAAAGGTTTTTGCCCTGATGATAACTCCTATACTGTTTTCATTGGAGGGCTTATAAGTCAGGGTAGATCTGAAGAGGCATGCAAATATTT GGAGGAGATGATAGAAAAGGGAATGAAAGCTCCTCAACTAGACTACAACAAATTCGCGGCTGATTTCTCCCGAGCTGGGAAGCCTGATATACTTGAGGAG TTAGCTCAAAAAATGAAGTTCTCTGGCAAGTTCGAAGTCTCTAATGTGTTTGCCAGGTGGGCTGAGATGATGAAGAAGAGAGTTAAGAGAAGAGAACCTG GTAATAGAAAGTGTACTCAACTTGCCCAAGGCCAACGGTACTCTCTTTATGAGATGGCAGATGGATGA
AA sequence Show only first row Show all	>Potri.014G121400.2 pacid=42762278 polypeptide=Potri.014G121400.2.p locus=Potri.014G121400 ID=Potri.014G121400.2.v4.1 annot-version=v4.1 MIRCCLHSNWHSSFKGQLYSNTKLIPLYQRQGRGGGGGQCSREQVCLPGCSSLPFSHSCCSSRDRRVGHTHGQIPFVWPYSSAPRTILQEKLSRILNSTA SNKSKTSLLPSFTIQGKVSELSVRWFSSSSNDDTDSDAENDENDESDNCERENKGAIVKSTADPAEVHKVCKVIDELFALDHNMEAVLDECGINLSHDLV IEVLERFRHARKPAFRFFCWAAEKPGFVHDSRTYHSMMIILAKARQFETMMSMLEEMGEKRLLTLDTFSIAMRAFAAAKERKKAVGIFELMKNHKYRVGV ETINALLDSLGRAKLGKEAQALFGKLEGRFTPNLRTYTVLLNGWCRVKNLMEAGRIWNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDAIKFFEVMKAKGP SPDVRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLMTGYGNHKRMDMVYELLKEMKEKGCPPDGKTYNALIKLMTSQRMPDDAVRIYKKM IQNGIEPSIHSYNMIMKSYFRIRNYEMGHAVWDEMSKKGFCPDDNSYTVFIGGLISQGRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRAGKPDILEE LAQKMKFSGKFEVSNVFARWAEMMKKRVKRREPGNRKCTQLAQGQRYSLYEMADG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62470			Pentatricopeptide repeat (PPR)...		Potri.014G121400 [exp]	0	1
AT5G62370			Tetratricopeptide repeat (TPR)...		Potri.004G200900 [exp]	2.23	0.9337
AT5G07900			Mitochondrial transcription te...		Potri.001G034500 [exp]	2.44	0.9237
AT5G41580			RING/U-box superfamily protein...		Potri.003G133000 [exp]	3.46	0.9136
AT3G07740		HXA2, HXA02, HA...	homolog of yeast ADA2 2A (.1.2...		Potri.014G166300 [exp]	3.74	0.9104
AT3G14470			NB-ARC domain-containing disea...		Potri.011G005900 [exp]	3.87	0.8926
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.001G213800 [exp]	4.69	0.9009	RHF2.3
AT4G16835			Tetratricopeptide repeat (TPR)...		Potri.003G081700 [exp]	5.65	0.9203
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Potri.002G085700 [exp]	5.83	0.8910
AT2G31600			unknown protein		Potri.017G035200 [exp]	7.07	0.9044
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Potri.008G058600 [exp]	7.74	0.8977

Compare expression of checked genes

Potri.014G121400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.