Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02070 563 / 0 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT3G24495 179 / 5e-48 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT4G25540 60 / 4e-09 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT3G20475 56 / 7e-08 ATMSH5 MUTS-homologue 5 (.1) AT3G18524 50 / 5e-06 ATMSH2, MSH2 MUTS homolog 2 (.1) AT3G24320 47 / 4e-05 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G121701 [exp] 784 / 0 AT4G02070 1402 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.008G190950 [exp] 489 / 2e-172 AT4G02070 410 / 2e-133 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.006G159200 [exp] 121 / 7e-29 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G156314 [exp] 121 / 8e-29 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.011G089500 [exp] 59 / 9e-09 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1) Potri.015G142900 [exp] 57 / 2e-08 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.012G060000 [exp] 52 / 7e-07 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.010G065000 [exp] 49 / 1e-05 AT3G24320 1670 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010010 [exp] 550 / 0 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10025030 [exp] 211 / 3e-59 AT4G02070 350 / 7e-104 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10033095 [exp] 155 / 7e-40 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10017724 [exp] 115 / 1e-26 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10027453 [exp] 58 / 1e-08 AT4G25540 248 / 9e-73 homolog of DNA mismatch repair protein MSH3 (.1) Lus10021545 [exp] 54 / 1e-07 AT3G20475 494 / 2e-170 MUTS-homologue 5 (.1) Lus10005743 [exp] 54 / 3e-07 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10042967 [exp] 53 / 5e-07 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10032469 [exp] 52 / 1e-06 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1) Lus10014462 [exp] 44 / 0.0003 AT3G24320 1506 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01624 [poplar] [flax] MutS_I MutS domain I PF05192 [poplar] [flax] MutS_III MutS domain III
Representative CDS sequence Show only first row Show all	>Potri.014G121601.1 pacid=42764492 polypeptide=Potri.014G121601.1.p locus=Potri.014G121601 ID=Potri.014G121601.1.v4.1 annot-version=v4.1 ATGGAGAATGTCGAGGGCGATAATGGCGGTGCTGGTGGTGGTAGTGGTGGTGACGACTCGAGTGATGAAGATTGGGGAAATAATGCGGAGAAGGATGTTA GCGAGGAGGAGGACGTTGATTTGATGGATGAGGAAGAATCGGATGATGGCAAGAAAGGAAAGAGAGGTGGGAAGGATTCGAGGAAAAGGAAAGCGAGTGG AGAAGGTGGAAAGTTGGATTTGGGAAAGAAGGGAAAGAGTGGCGGGGATGCGAATGGAGTATTTAATGGCTTTGAAAATGCCTTGATGACTGATGCATCA GAAAGATTTAGCACGCGTGAAGCTGAAAAGTTTCCATTTCTTGGACGAGAACGCAGGGATGCAAAGAGAAGGCGTCCTGGAGATGTAGATTATGATCCCA GGACTCTATACTTGCCCGCTGAGTTTGCAAAGAGTTTAACAGGTGGCCAGAGACAATGGTGGGAGTTTAAGTCAAAGCACATGGATAAGGTTTTGTTTTT CAAGATGGGCAAATTTTATGAGCTCTTTGAAATGGATGCCCATGTAGGAGCTAAAGAACTAGATTTGCAATACATGAAGGGAGAACAACCTCACTGTGGC TTTCCAGAGAAGAACTTCTCTTTGAATGTGGAGAAATTGGCTAGAAAGGGTTATCGAGTTCTTGTTGCAGAGCAGACAGAAACACCTGAACAGTTAGAGC TTCGTCACAAAGAGAAAGGTTCTAAAGACAAGGTTGTAAAACGTGAAATATGTGCGGTGATTACAAAAGGAACACTAACTGAGGGGGAAATCATTCTTGG ACAGTTTGGAGATGATGCTGAATGCAGTTCATTGTGCTGTCTATTATCTGAGCTGAGGCACGTAGAAATTGTAAAACCTGCTAAAATGCTTAGCTCCGAA ACTGAGAGAGTAATGGTGAGACATACTAGAAATCCCTTGGTCAATGAGTTGGCTCCCCTCTCAGAATTCTGGGACGCGGATAAAACTGTTCAGGAAGTCA AAACTATCTACAAGCGTATTGGTGATCTTTCAGCTTCTGGACCCTTAAATAAAACAGATTTGGATACAACTAACCTTAATGTTGGAGAATATAGGCCAAG CTGCCTGCCCAGCATTTTGTCAGAGTTTGTCAATAAAGGAGAAAATGGAAGCCTTGCTCTCTCAGCTCTTGGAGGCGCTCTCTATTATCTAAAACAGGCA TTTTTGGATGAGACATTGCTTAGATTTGCAAAATTTGATTCCCTTCCTTGCTCTGATTTCTGTGAGGTTGCTAAGAAACCATACATGATTCTCGATGCTG CTGCCCTGGAGAACCTTGAGATTTTTGAGAACAGCAGAAACGGAGACACTTCAGGGACGCTGTATGCGCAATTGAATCATTGTGTGACGGCATTTGGAAA GAGGTTGCTTAAAACATGGCTAGCAAGACCATTATACCATTTGGAATCAATTAAAGATTGCCAGGATGCTGTAGCAGGTCTGCGGGGGGTAAATCAACCC ATGATGGTTGAATTTCAAAAGGTGTTGTCCAGGCTTCCAGACATTGAGCAGCTGCTTGCACGCATATTTTCTACCAGGTAA
AA sequence Show only first row Show all	>Potri.014G121601.1 pacid=42764492 polypeptide=Potri.014G121601.1.p locus=Potri.014G121601 ID=Potri.014G121601.1.v4.1 annot-version=v4.1 MENVEGDNGGAGGGSGGDDSSDEDWGNNAEKDVSEEEDVDLMDEEESDDGKKGKRGGKDSRKRKASGEGGKLDLGKKGKSGGDANGVFNGFENALMTDAS ERFSTREAEKFPFLGRERRDAKRRRPGDVDYDPRTLYLPAEFAKSLTGGQRQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCG FPEKNFSLNVEKLARKGYRVLVAEQTETPEQLELRHKEKGSKDKVVKREICAVITKGTLTEGEIILGQFGDDAECSSLCCLLSELRHVEIVKPAKMLSSE TERVMVRHTRNPLVNELAPLSEFWDADKTVQEVKTIYKRIGDLSASGPLNKTDLDTTNLNVGEYRPSCLPSILSEFVNKGENGSLALSALGGALYYLKQA FLDETLLRFAKFDSLPCSDFCEVAKKPYMILDAAALENLEIFENSRNGDTSGTLYAQLNHCVTAFGKRLLKTWLARPLYHLESIKDCQDAVAGLRGVNQP MMVEFQKVLSRLPDIEQLLARIFSTR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.014G121601 [exp]	0	1
AT5G64420			DNA polymerase V family (.1)		Potri.001G285600 [exp]	2.00	0.8449
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Potri.002G181400 [exp]	2.00	0.8617	SIN1.1,DCL902
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.014G121701 [exp]	4.58	0.8194
AT3G60400			Mitochondrial transcription te...		Potri.014G044900 [exp]	4.89	0.8409
AT2G06040			unknown protein		Potri.006G142200 [exp]	5.09	0.8042
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Potri.007G004900 [exp]	7.34	0.8324
AT1G17450			B-block binding subunit of TFI...		Potri.003G064000 [exp]	9.48	0.8160
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Potri.012G092400 [exp]	13.30	0.7591
AT4G32700		TEB	TEBICHI, helicases;ATP-depende...		Potri.018G036600 [exp]	16.06	0.8411
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.001G135300 [exp]	17.23	0.7781

Compare expression of checked genes

Potri.014G121601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.