Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02070 1403 / 0 ATMSH6, MSH6-1 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) AT4G25540 279 / 1e-77 ATMSH3, MSH3 homolog of DNA mismatch repair protein MSH3 (.1) AT3G24495 244 / 5e-66 ATMSH7, MSH7, MSH6-2 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) AT3G18524 189 / 7e-49 ATMSH2, MSH2 MUTS homolog 2 (.1) AT4G17380 143 / 2e-34 MSH4, ATMSH4 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) AT3G20475 141 / 5e-34 ATMSH5 MUTS-homologue 5 (.1) AT3G24320 115 / 1e-25 CHM1, ATMSH1, CHM, MSH1 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1) AT5G54090 89 / 9e-18 DNA mismatch repair protein MutS, type 2 (.1) AT1G65070 87 / 5e-17 DNA mismatch repair protein MutS, type 2 (.1.2) AT4G31880 50 / 2e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G121601 [exp] 786 / 0 AT4G02070 563 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.008G190950 [exp] 591 / 0 AT4G02070 410 / 2e-133 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.008G191051 [exp] 358 / 2e-114 AT4G02070 294 / 1e-91 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Potri.015G142900 [exp] 264 / 2e-72 AT4G25540 1313 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Potri.006G156314 [exp] 234 / 9e-63 AT3G24495 1348 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.006G159200 [exp] 233 / 2e-62 AT3G24495 1372 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Potri.012G060000 [exp] 218 / 5e-58 AT3G18524 1438 / 0.0 MUTS homolog 2 (.1) Potri.011G089500 [exp] 186 / 3e-48 AT3G20475 1264 / 0.0 MUTS-homologue 5 (.1) Potri.001G156200 [exp] 159 / 2e-39 AT4G17380 1226 / 0.0 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010010 [exp] 1439 / 0 AT4G02070 1559 / 0.0 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10025030 [exp] 310 / 2e-89 AT4G02070 350 / 7e-104 MUTS HOMOLOG 6-1, ARABIDOPSIS THALIANA MUTS HOMOLOG 6, MUTS homolog 6 (.1.2) Lus10005743 [exp] 270 / 2e-74 AT4G25540 1305 / 0.0 homolog of DNA mismatch repair protein MSH3 (.1) Lus10017724 [exp] 236 / 2e-63 AT3G24495 1267 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10042967 [exp] 199 / 6e-52 AT3G18524 1479 / 0.0 MUTS homolog 2 (.1) Lus10033095 [exp] 194 / 3e-50 AT3G24495 1138 / 0.0 MUTS HOMOLOG 6-2, ARABIDOPSIS THALIANA MUTS HOMOLOG 7, MUTS homolog 7 (.1) Lus10032469 [exp] 189 / 1e-48 AT3G18524 1449 / 0.0 MUTS homolog 2 (.1) Lus10027452 [exp] 178 / 1e-48 AT4G25540 447 / 1e-148 homolog of DNA mismatch repair protein MSH3 (.1) Lus10028966 [exp] 139 / 1e-34 AT4G17380 413 / 3e-137 ARABIDOPSIS MUTS HOMOLOG 4, MUTS-like protein 4 (.1) Lus10014462 [exp] 119 / 7e-27 AT3G24320 1506 / 0.0 CHLOROPLAST MUTATOR, MUTL protein homolog 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00488 [poplar] [flax] MutS_V MutS domain V CL0023 [poplar] [flax] PF05188 [poplar] [flax] MutS_II MutS domain II CL0023 [poplar] [flax] PF05190 [poplar] [flax] MutS_IV MutS family domain IV CL0023 [poplar] [flax] PF05192 [poplar] [flax] MutS_III MutS domain III
Representative CDS sequence Show only first row Show all	>Potri.014G121701.1 pacid=42762936 polypeptide=Potri.014G121701.1.p locus=Potri.014G121701 ID=Potri.014G121701.1.v4.1 annot-version=v4.1 ATGGCACCGTCGCGTAAACCGAGCAACGGTAGATCACCAATAGTAAATCCACAGCGCCAAATAACTGCCTTCTTCTCCAAGACGACGACTCCTTCTCCAT CTCCTTCTCCCACGCTCTCTAAAAAACAAATCCCTAAATCCCATACTAAACCTAACCCTAACCCTAGCTCTCGAACCCAAAGCCCTAGTTCTAGCCCAAC TACTCCTTCGCCAGTCCAATCTAAGCCTAAAAAACCCCTACTAGTTATTGGACAAACTCCTTCACCGTCTCCTTCAAAAGTTGGAGTGTATGGCAAAGAG GCGGTGGAGAGGAGGGTTAGGGTTTACTGGCCCCTGGATAAGAGCTGGTACGAGGGTCTTGTCAAATCTTACGATGACGAGTCGAAGAAGCATTTGATAC AATATGATGATTCTGAAGAGGAATTGTTGGATTTGAACAATGAGAAGATTGAGTGGGTTGAGCCATGTGTTAAGAAATTTAAGAGGTTGCGCAGGGGTTC TTTAGGTTTTAGGAAGATTGTGCTTGAAGATGATGAGATGGAGAATGTCGAGGCCGATAATGGCGGTGCTGGTGGTGGTAGTGGTGGTGACGACTCGAGT GATGAAGATTGGGGAAAGAATGCGGAGAAGGATGTTAGCGAGGAGGAGGACGTTGATTTGATGGATGAGGAAGAAGCGGATGATGGCAAGAAAGGAAAGA GAGGTGGGAAGGATTCGAGGAAAAGGAAAGCGAGTGGAGAAGGTGGAAAGTTGGATTTGGGAAAGAAGGGAAAGAGTGGTGGGGATGCGAGTACGGGAGG AGTCAAGGTTTCAGTTGTGGAGCCTGTAAAGAACAAGGAGAATGGAGTTTTTAATGGCTTTGAAAATGCCTTGATGACCTATGCATCAGAAAGATTTAGC ACGCGTGAAGCTGAAAAGTTTCCATTTCTTGGACGAGAACGCAGGGATGCAAAGAGAAGGCGTCCTGGAGATGTAGGTTATGATCCCAGGACTCTATACT TGCCCGCTGAGTTTGCAAAGAGTTTAACAGGTGGCCAGAGACAATGGTGGGAGTTTAAGTCAAAGCACATGGATAAGGTTTTGTTTTTCAAGATGGGCAA ATTTTATGAGCTCTTTGAAATGGATGCCCATGTAGGAGCTAAAGAACTAGATTTGCAATACATGAAGGGAGAACAACCTCACTGTGGCTTTCCAGAGAAG AACTTCTCTTTGAATGTGGAGAAATTGGCTAGAAAGGGTTATCGAGTTCTTGTTGTAGAGCAGACAGAAACACCTGAACAGTTAGAGCTTCGTCGCAAAG AGAAAGGTTCTAAAGACAAGGTTGTAAAACGTGAAATATGTGCGGTGATTACAAAAGGAACACTAACTGAGGGGGAATTTCTTTCTGCAAATCCTGATGC TTCTTATTTAATGGCACTGACTGAAAGTAGCCAGAGTTTGGCAAACCAAGGTCTTGAGCGGATTTTTGGTGTTTGTGTTGTTGATGTCACTACTAGCAGA ATCATTCTTGGACAGTTTGGAGATGATGCTGAATGCAGTTCATTGTGCTGTCTATTATCTGAGCTGAGGCCGGTAGAAATTGTAAAACCTGCTAAAATGC TTAGCTCCGAAACTGAGAGAGTAATGGTGAGACATACTAGAAATCCCTTGGTCAATGAGTTGGCTCCCCTCTCAGAATTCTGGGATGCGGAGAGAACTGT TCAGGAAGTCAAAACTATCTACAAGCATATTGGTGATCTTTCAGCTTCTGGACCCTTAAATAAAACAGATTTGGATACAACTAACCTTAATGTTGGAGAA TATAGGCCAAGCTGCCTGCCCAGCATTTTGTTAGAGTTTGTCAATAAAGGAGAAAATGGAAGCCTTGCTCTCTCAGCTCTTGGAGGCGCTCTCTATTATC TAAAACAGGCATTTTTGGATGAGACATTGCTTAGATTTGCAAAATTTGAATCCCTTCCTTGCTCTGATTTCTGTGAGGTTGCTAAGAAACCATACATGAT TCTCGATGCTGCTGCCCTGGAGAACCTTGAGATTTTTGAGAACAGCAGAAACGGAGACACTTCAGGGACGCTGTATGCGCAATTGAATCATTGTGTGACA GCATTTGGAAAGAGGTTGCTGAAAACATGGCTAGCAAGACCATTATACCATTTGGAATCAATTAAAGATCGCCAGGATGCTGTAGCAGGTCTGCGGGGGG TAAATCAACCTATGATGCTTGAATTTCAAAAGGTGTTGTCCAGGCTTCCAGACATTGAGCGGCTGCTTGCACGCATATTTTCTACCAGCGAAGCCAATGG AAGAAATGCAAATAAAGTAGTTTTATATGAGGATGCAGCAAAGAAGCAGCTTCAGGAGTTTATATCCGCTCTACGTGGCTGTGAATTAGTGGCCCAAGCA TGTTCTTCGCTTGCTGTCATTTTGGAAAATGTGGAGTCCGGACAGTTGCATCATTTATTAACACCTGGTAAAGGTCTTCCTGACATCCTTCCAATTCTTA AACATTTTAAGAGTGCCTTTGATTGGGTAGAAGCCAACAATTCTGGACGTATAATACCTCATGAAGGTGTCGATGTAGAGTTTGACTCTGCTTGTGAAAA AGTTAAAGAGGTTGAATCTAGTTTGGCTAGACACCTGAAGGAACAACAGAAATTACTAGGGGACAAATCAATTACTTATGTCACAGTTGGAAAAGAGGCA TACCTGTTAGAAGTTCCTGAACATCTGCGTGGTAGTATTCCTCAAGATTATGAGCTGCGTTCATCCAAAAAGGGCTTCTACAGGTATTGGACTCCAAGTA TTAAGAAGTTCTTAGGAGAGCTCTCACAGGCTGAATCTGAAAAGGAGTCGGCGTTGAAGAGCATTTTGCAGAGGTTAATTGTGTGTTTTTGCAAGTACCA TGACAAGTGGAGACAGTTAGTTTCTGCAACTGCAGAACTGGATGTTTTGATCAGTCTGGCAATTGCTAGTGACTTTTATGAAGGACCTGCATGTTGTCCA ACCATCGTAGGTTCATCATTGTCAAGTCAAGTGCCATGCCTTTCTGCAAAAAAATTAGGACACCCTGTTCTCAGGAGCGATTCTTTGGGAAAGGGTGCAT TTGTCCCAAATGACATTAGTATTGGGGGTTCTGGTCGTGCCAGCTTTATCCTTCTCACTGGTCCTAACATGGGTGGAAAATCTACTCTTCTTCGGCAAGT TTGTTTGGCTGTGATTCTGGCCCAGATTGGAGCTGATGTCCCTGCTGAAAGCTTTGAGTTGTCTCCTGTTGACCGCATCTTTGTCAGAATGGGTGCAAAA GATCATATTATGGCAGGCCAGAGTACATTTTTGACAGAGCTCTCAGAAACTGCATTGATGCTGTCATCGGCAACCTGTAATTCATTGGTGGCGTTGGATG AACTTGGACGTGGCACATCAACTTCAGATGGACAAGCAATAGCCGAATCAGTTCTTGAACATTTTGTCCACAAGGTACAGTGTCGAGGAATGTTTTCAAC TCACTATCACCGATTAGCTGTAGATTATCAAAAAGATTCAAAGGTCTCACTGTACCATATGTCATGTCAAGTTGGAAATGGAGTTGGAGTGGAAGAAGTT ACATTTCTTTATAGGTTGAGACCTGGTGCCTGCCCTAAGAGTTATGGTGTCAATGTTGCAAGACTGGCTGGACTTCCAGACTCGATACTTCATAATGCTG CTGCCAAGTCTAGGGAATTTGAGGCTGTATATGGTCGACACAGAAAGGGATCTGAAGGAAAGTTGGCCATTCAAAGTTGTGACAAGATGGCAGTATTAAT CCGAAGTTTGATCAATGCCACAACAAGCTTGAGTGGCCATAAGTCTGCTGGGATCGATATCAGCTCAGTGACCAAACTTCAGGATAAAGCTAGGATATTT TTGCAGTAA
AA sequence Show only first row Show all	>Potri.014G121701.1 pacid=42762936 polypeptide=Potri.014G121701.1.p locus=Potri.014G121701 ID=Potri.014G121701.1.v4.1 annot-version=v4.1 MAPSRKPSNGRSPIVNPQRQITAFFSKTTTPSPSPSPTLSKKQIPKSHTKPNPNPSSRTQSPSSSPTTPSPVQSKPKKPLLVIGQTPSPSPSKVGVYGKE AVERRVRVYWPLDKSWYEGLVKSYDDESKKHLIQYDDSEEELLDLNNEKIEWVEPCVKKFKRLRRGSLGFRKIVLEDDEMENVEADNGGAGGGSGGDDSS DEDWGKNAEKDVSEEEDVDLMDEEEADDGKKGKRGGKDSRKRKASGEGGKLDLGKKGKSGGDASTGGVKVSVVEPVKNKENGVFNGFENALMTYASERFS TREAEKFPFLGRERRDAKRRRPGDVGYDPRTLYLPAEFAKSLTGGQRQWWEFKSKHMDKVLFFKMGKFYELFEMDAHVGAKELDLQYMKGEQPHCGFPEK NFSLNVEKLARKGYRVLVVEQTETPEQLELRRKEKGSKDKVVKREICAVITKGTLTEGEFLSANPDASYLMALTESSQSLANQGLERIFGVCVVDVTTSR IILGQFGDDAECSSLCCLLSELRPVEIVKPAKMLSSETERVMVRHTRNPLVNELAPLSEFWDAERTVQEVKTIYKHIGDLSASGPLNKTDLDTTNLNVGE YRPSCLPSILLEFVNKGENGSLALSALGGALYYLKQAFLDETLLRFAKFESLPCSDFCEVAKKPYMILDAAALENLEIFENSRNGDTSGTLYAQLNHCVT AFGKRLLKTWLARPLYHLESIKDRQDAVAGLRGVNQPMMLEFQKVLSRLPDIERLLARIFSTSEANGRNANKVVLYEDAAKKQLQEFISALRGCELVAQA CSSLAVILENVESGQLHHLLTPGKGLPDILPILKHFKSAFDWVEANNSGRIIPHEGVDVEFDSACEKVKEVESSLARHLKEQQKLLGDKSITYVTVGKEA YLLEVPEHLRGSIPQDYELRSSKKGFYRYWTPSIKKFLGELSQAESEKESALKSILQRLIVCFCKYHDKWRQLVSATAELDVLISLAIASDFYEGPACCP TIVGSSLSSQVPCLSAKKLGHPVLRSDSLGKGAFVPNDISIGGSGRASFILLTGPNMGGKSTLLRQVCLAVILAQIGADVPAESFELSPVDRIFVRMGAK DHIMAGQSTFLTELSETALMLSSATCNSLVALDELGRGTSTSDGQAIAESVLEHFVHKVQCRGMFSTHYHRLAVDYQKDSKVSLYHMSCQVGNGVGVEEV TFLYRLRPGACPKSYGVNVARLAGLPDSILHNAAAKSREFEAVYGRHRKGSEGKLAIQSCDKMAVLIRSLINATTSLSGHKSAGIDISSVTKLQDKARIF LQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.014G121701 [exp]	0	1
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.014G121601 [exp]	4.58	0.8194
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Potri.008G047700 [exp]	8.06	0.8244
AT1G31810		AFH14	Formin Homology 14 (.1)		Potri.003G103800 [exp]	8.71	0.8189
AT3G60400			Mitochondrial transcription te...		Potri.014G044900 [exp]	9.53	0.8123
					Potri.014G023301 [exp]	16.61	0.7850
AT5G53430		SET29, ATX5, SD...	SET domain group 29 (.1)		Potri.015G014300 [exp]	18.70	0.8074	SDG29.1
AT5G05560		EMB2771, APC1	EMBRYO DEFECTIVE 2771, E3 ubiq...		Potri.008G070300 [exp]	20.49	0.8035	APC1.1
AT1G55325		MAB2, GCT	MACCHI-BOU 2, GRAND CENTRAL, R...		Potri.003G220800 [exp]	23.83	0.8110
AT1G16800			P-loop containing nucleoside t...		Potri.010G253700 [exp]	25.74	0.8025
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Potri.015G089000 [exp]	28.91	0.7854

Compare expression of checked genes

Potri.014G121701 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.