Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G02075 166 / 3e-51 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G01275 130 / 8e-37 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 109 / 5e-29 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G02960 100 / 2e-25 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT3G47550 100 / 4e-25 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT5G62460 98 / 3e-24 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 95 / 3e-23 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT4G32670 58 / 1e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G34100 57 / 2e-09 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G196600 [exp] 330 / 3e-116 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.004G093500 [exp] 152 / 1e-45 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G115600 [exp] 147 / 2e-43 AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.017G122300 [exp] 137 / 4e-40 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.008G127400 [exp] 130 / 4e-37 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G169200 [exp] 108 / 2e-28 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.008G086300 [exp] 97 / 3e-24 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.013G126600 [exp] 88 / 5e-21 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.019G111700 [exp] 87 / 2e-20 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010011 [exp] 220 / 3e-72 AT1G02610 174 / 2e-54 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10025031 [exp] 208 / 1e-67 AT1G02610 178 / 6e-56 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10002282 [exp] 144 / 3e-42 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10004058 [exp] 144 / 3e-42 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10021670 [exp] 112 / 2e-29 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10034640 [exp] 108 / 3e-28 AT2G01275 202 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10035271 [exp] 105 / 4e-27 AT2G01275 240 / 2e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10034454 [exp] 105 / 4e-27 AT3G47550 296 / 8e-101 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10035010 [exp] 105 / 5e-27 AT3G47550 284 / 8e-96 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10012826 [exp] 103 / 2e-26 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12428 [poplar] [flax] DUF3675 Protein of unknown function (DUF3675) CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.014G121900.1 pacid=42763433 polypeptide=Potri.014G121900.1.p locus=Potri.014G121900 ID=Potri.014G121900.1.v4.1 annot-version=v4.1 ATGGGAGATATTGTATTGCTCGTGGATGATTTGCAGACAAGTTGTGCAATACCACACTGTAGGATTTGCCATGAAGCAGAATTTGAAAGCTGCAAGAGCT TGGAAGCTCCTTGTGCTTGCTCTGGAACTGTCAAGTTTGCACACAGAGATTGCATACAGAGATGGTGTAACGAGAAGGGAAACACAACGTGTGAAATATG TCTCCAGAATTATGAACCAGGATACTCGGCACCTTCAAGAAAGTGTGAGATGATCGAGCCAATGACGATTAGAGATAGTTTGGAAATCCCAAGAAGAGAA CATGATCCGGAAAACCAAGAATTAGGAGGCATAGCTGAAAGAGCCACCGCTGGTGCTGAGGAGTACTCACATTGCTCATCTGCCGCGGACAGAAGCGCCT CTTGCTGCCGGTTTTTGGCTCTAACGTTTACGGTCCTTATGCTCTTGAGACATCTTTTTGCTACGCTCACCGGTGGAACAGAAGATTACCCATTTACACT TGTTACTTTGCTCATCTTAAGAGCTAGTGGGATTTTATTCCCAATGTATATAGTTTTTCGGACAATTGCAGCAGTTCATAAAAGCATCCGGTCTCAATAT CAGGATTCTGAGGATGACGAAGACTACACCTCAAACTCTGATGGAGATGAGGGCGAGGATCAAGAAGATGCGCACCATCATTTAGTATAG
AA sequence Show only first row Show all	>Potri.014G121900.1 pacid=42763433 polypeptide=Potri.014G121900.1.p locus=Potri.014G121900 ID=Potri.014G121900.1.v4.1 annot-version=v4.1 MGDIVLLVDDLQTSCAIPHCRICHEAEFESCKSLEAPCACSGTVKFAHRDCIQRWCNEKGNTTCEICLQNYEPGYSAPSRKCEMIEPMTIRDSLEIPRRE HDPENQELGGIAERATAGAEEYSHCSSAADRSASCCRFLALTFTVLMLLRHLFATLTGGTEDYPFTLVTLLILRASGILFPMYIVFRTIAAVHKSIRSQY QDSEDDEDYTSNSDGDEGEDQEDAHHHLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02610			RING/FYVE/PHD zinc finger supe...		Potri.014G121900 [exp]	0	1
AT1G15060			Uncharacterised conserved prot...		Potri.012G053700 [exp]	9.48	0.6132
AT4G05070			Wound-responsive family protei...		Potri.011G041700 [exp]	10.95	0.6390
AT1G70740			Protein kinase superfamily pro...		Potri.010G109700 [exp]	11.48	0.6228
AT3G19950			RING/U-box superfamily protein...		Potri.007G074014 [exp]	23.68	0.5755
AT1G23780			F-box family protein (.1)		Potri.005G109700 [exp]	23.87	0.5632
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G148000 [exp]	28.14	0.5714
AT5G06260			TLD-domain containing nucleola...		Potri.006G206200 [exp]	29.58	0.5568
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Potri.014G041600 [exp]	30.33	0.5622	Pt-BES1.1
AT2G42070		ATNUDX23, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.006G192800 [exp]	35.21	0.5326
AT5G40100			Disease resistance protein (TI...		Potri.006G283100 [exp]	35.91	0.6027

Compare expression of checked genes

Potri.014G121900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.