Plant FIBer expression Database

Potri.014G122100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02090 93 / 1e-23 unknown protein
AT3G03280 48 / 4e-07 unknown protein
AT5G17350 45 / 4e-06 unknown protein
AT4G37240 45 / 6e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G196900
[exp]
251 / 7e-86 AT4G02090 92 / 3e-23 unknown protein
Potri.008G127200
[exp]
50 / 1e-07 AT3G03280 127 / 2e-37 unknown protein
Potri.010G116000
[exp]
46 / 2e-06 AT3G03280 131 / 4e-39 unknown protein
Potri.012G045600
[exp]
44 / 1e-05 AT1G18290 129 / 1e-38 unknown protein
Potri.003G160000
[exp]
44 / 2e-05 AT1G28190 168 / 4e-51 unknown protein
Potri.015G036800
[exp]
44 / 2e-05 AT1G18290 122 / 1e-35 unknown protein
Potri.001G070700
[exp]
43 / 4e-05 AT1G28190 150 / 2e-44 unknown protein
Potri.017G121200
[exp]
42 / 4e-05 AT3G03280 145 / 7e-45 unknown protein
Potri.004G094000
[exp]
40 / 0.0003 AT3G03280 143 / 1e-43 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010014
[exp]
137 / 2e-40 AT4G02090 127 / 2e-36 unknown protein
Lus10008274
[exp]
45 / 1e-05 AT1G64700 118 / 9e-33 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14009 DUF4228 Domain of unknown function (DUF4228)
Representative CDS sequence
>Potri.014G122100.1 pacid=42764269 polypeptide=Potri.014G122100.1.p locus=Potri.014G122100 ID=Potri.014G122100.1.v4.1 annot-version=v4.1
ATGGGAAACTGCATCACATACCACAATTCATCAAATTCGGCTGGGAGAGTGATTCTATCGGATGGTAGGGTTTGTGAGTTTGATAAACCGCTAACGGTGG
CTGAGCTGATGCTAGAATACCCACAACAAGTTGTGGTCGAGTTTCACTCATATTTGACTGAAAAGAGGCCACCACCACTGCCTGCTGACAAGAAGCTAGA
AATGAAGTTGTACCTAATGCTGCCTATGAAGCCAGGGAAACCAGCGTCATTATCATCAGAAGAAGCGAGACGTGTTCTTTTGAGTGCGAACTCGGTTTTA
AGATCACGGTCTTCTTTATCATCATCGAGGTTTCTCCCTTTATTTGCTATGATGTGCCCTGCTGGAGTTGGAGAGGAACAAAAGCTTGTTATGCGAAAGA
AGGAATGTTATGTAGAGGAGAAGCCAGCTGCGGATCAGAAATATGATTCTGAGCTAACAGAGATTTTTGAGAGTAGGCCTGAATATTTGAGTAGGCAGCT
TTCAGGTAAAGGGACGTGGAAGCCTAGCTTGGGCACTATCAATGAGAAAAGGGTAGAGAAAAAGATCCCTCGCTGGTTGTTTTGA
AA sequence
>Potri.014G122100.1 pacid=42764269 polypeptide=Potri.014G122100.1.p locus=Potri.014G122100 ID=Potri.014G122100.1.v4.1 annot-version=v4.1
MGNCITYHNSSNSAGRVILSDGRVCEFDKPLTVAELMLEYPQQVVVEFHSYLTEKRPPPLPADKKLEMKLYLMLPMKPGKPASLSSEEARRVLLSANSVL
RSRSSLSSSRFLPLFAMMCPAGVGEEQKLVMRKKECYVEEKPAADQKYDSELTEIFESRPEYLSRQLSGKGTWKPSLGTINEKRVEKKIPRWLF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G02090 unknown protein Potri.014G122100
[exp]
0 1
Potri.001G434101
[exp]
1.41 0.7513
AT2G29420 GST25, ATGSTU7 GLUTATHIONE S-TRANSFERASE 25, ... Potri.010G061800
[exp]
3.60 0.7837
AT5G64260 EXL2, MSJ1.10 EXORDIUM like 2 (.1) Potri.001G311700
[exp]
4.58 0.7477 MSJ1.1
AT3G62200 Putative endonuclease or glyco... Potri.013G003100
[exp]
13.07 0.7202
AT3G58060 Cation efflux family protein (... Potri.001G010300
[exp]
41.18 0.7229
AT5G14750 MYB WER1, WER, AtMY... WEREWOLF 1, WEREWOLF, myb doma... Potri.003G064600
[exp]
42.70 0.6515
AT1G79460 ATKS1, ATKS, GA... GA REQUIRING 2, ARABIDOPSIS TH... Potri.008G082400
[exp]
59.16 0.6813
AT2G03890 UBDKGAMMA7, ATP... UBIQUITIN-LIKE DOMAIN KINASE G... Potri.008G112200
[exp]
66.82 0.6437
AT5G66440 unknown protein Potri.007G021500
[exp]
67.04 0.6457
AT1G69170 SBP SPL6 Squamosa promoter-binding prot... Potri.010G154300
[exp]
77.78 0.6536

Potri.014G122100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.