Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02100 637 / 0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT2G47440 629 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62570 589 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G02650 508 / 8e-176 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G12430 83 / 3e-16 TPR16 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) AT2G41520 69 / 7e-12 TPR15 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) AT4G30480 46 / 3e-05 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197300 [exp] 894 / 0 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.009G050200 [exp] 86 / 4e-17 AT5G12430 821 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.016G043900 [exp] 84 / 1e-16 AT2G41520 612 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Potri.001G255000 [exp] 82 / 7e-16 AT5G12430 738 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Potri.006G047700 [exp] 81 / 2e-15 AT2G41520 640 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010272 [exp] 728 / 0 AT4G02100 702 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10036335 [exp] 678 / 0 AT4G02100 645 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10002438 [exp] 646 / 0 AT4G02100 648 / 0.0 Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10035427 [exp] 85 / 9e-17 AT2G41520 635 / 0.0 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2) Lus10005022 [exp] 84 / 1e-16 AT5G12430 791 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10019041 [exp] 83 / 3e-16 AT5G12430 787 / 0.0 tetratricopeptide repeat 16, Heat shock protein DnaJ with tetratricopeptide repeat (.1) Lus10031042 [exp] 51 / 2e-06 AT2G41520 505 / 4e-160 tetratricopeptide repeat 15, Heat shock protein DnaJ with tetratricopeptide repeat (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.014G122300.1 pacid=42763228 polypeptide=Potri.014G122300.1.p locus=Potri.014G122300 ID=Potri.014G122300.1.v4.1 annot-version=v4.1 ATGGTTGATTCTTCTTCTTCAACTAGAAAAACAACAAAAATGACCACCTCTACTTCTCCTTGTCTTAGTGGGAATGAAAAGAAGCACTGGTGGCTTAGCA ACCGAAAGATTGTGGACAAGTACATTAAGGATGCAAGAAACCTGATTGCAAGCCAAGAAATGAGCGAGATTGCGTCCGCTCTTAACCTTCTAGACGCGGC ACTTGCACTCTCTCCTCGCTTTGAAGTGGCTCTAGAGCTCAAAGCACGATCTTTGCTTTATCTTAGGCGATTCAAGGACGTGGCTGATATGCTTCAGGAC TACATTCCTAGCCTTAAAATGGCAAACGACGATTCGGGCTCAATTTCTGCTTCTGATAGCTCTTCCCAACAGCTTTCAAGAGAGCGAGTTAACTTGTTGC CTTCTGAGAAAACTGATCCAAGTTTCAAGTGTTTTTCTGTTTCCGACCTGAAGAAGAAAGTGATGGCCGGGCTCTGTAAAAACTGCGATAAAGAAGGGCA ATGGAGGTACTTGGTTTTAGGTCAGGCTTGTTGCCATCTAGGTCTAATGGAGGATGCCATGGTGCTACTCCAGACCGGAAAACGCCTGACAACTGCTGCA TTCCGCCGTGAAAGCATTTCCTGGTCAGAGGACAGCTTCTCTTTCTCCAACTTCCCAGTCTCTAGTGATATATCCACATCGACAGCCCCACCTACCCCAC CGAGAAATTTAACCGAATCCGAAAGCATCCCACAACTCCTTGCCCACATCAAGCTCCTTCTTCGCCGCCGCACAGCCGCTTTGGCAGCCCTGAACGCTGG CCTTTACTCTGAGGCCATCCGCCACTTCACCAAGATCGTGGAAGGCCGACGTGGGGCTCCACAGGGATTCCTTGCTGAATGCTATATGCATAGAGCTTTT GCATATAAAGCATCAGGAAGAATTGCAGAGTCCATTGCTGATTGCAACAAGACTTTAGCTTTAGACCCCACCTGCATTCAGGCACTTGATACAAGAGCTT TTCTTCTAGAAACAATACGCTGCTTGCCTGATTGTTTACATGATCTGGAGCACTTGAAACTATTGTATAATTCAATCCTGCGGGACAGGAAGCTACCAGG TCCTGCTTGGAAGCGGCATAATGTTGGGTACAGGGAGATTCCAGGTAAACTTTGTGCATTGTCTACCAAGATTCAAGAATTGAAGCAGAGAGTTGCTTCT GGGGAGACTGGAAATGTTGATTATTATGCTTTGATTGGATTGAGGCGTGGGTGTTCGAGATCCGAATTAGAGAGAGCTCATTTATTATTGAGTTTGAGGC ACAAGCCTGACAAATCTATAAATTTTATTGAGAGGTGCGAGTTTGCAGATGATAGGGATCTTGATTCAGTAAAAGACCGTGCAAAAATGTCTGCCTTGTT GCTCTATAGATTGCTTCAAAAGGGTTATTCTAACGTGATGTCAACAATCATGGATGAAGAGGTTGGAGAGAAGCAAAGAAAGAAAGCTGCAGCTGCTTTG CAAGCAGCTCAAGCAGCAGCAATTCAAGCACAGCAAACAACACAAAATGCCAAAATGCAATCGAACCCATCTGCAGTGGAGATTTCTGGTTCTGATAGGA TCAATTGGAATGACAATAAAGTGTCATCTGCATCTGCAGGGAGCACCGCTGCACCTGTCTTTCAAGGGGTGTTTTGCCGCGACCTTGCTGCAGTCGGGAA TTTGCTATCACAAGGTGGGTTTAGCCGTCCAATCCCAATGAAATATGAGGCATTGAGCTGCTAA
AA sequence Show only first row Show all	>Potri.014G122300.1 pacid=42763228 polypeptide=Potri.014G122300.1.p locus=Potri.014G122300 ID=Potri.014G122300.1.v4.1 annot-version=v4.1 MVDSSSSTRKTTKMTTSTSPCLSGNEKKHWWLSNRKIVDKYIKDARNLIASQEMSEIASALNLLDAALALSPRFEVALELKARSLLYLRRFKDVADMLQD YIPSLKMANDDSGSISASDSSSQQLSRERVNLLPSEKTDPSFKCFSVSDLKKKVMAGLCKNCDKEGQWRYLVLGQACCHLGLMEDAMVLLQTGKRLTTAA FRRESISWSEDSFSFSNFPVSSDISTSTAPPTPPRNLTESESIPQLLAHIKLLLRRRTAALAALNAGLYSEAIRHFTKIVEGRRGAPQGFLAECYMHRAF AYKASGRIAESIADCNKTLALDPTCIQALDTRAFLLETIRCLPDCLHDLEHLKLLYNSILRDRKLPGPAWKRHNVGYREIPGKLCALSTKIQELKQRVAS GETGNVDYYALIGLRRGCSRSELERAHLLLSLRHKPDKSINFIERCEFADDRDLDSVKDRAKMSALLLYRLLQKGYSNVMSTIMDEEVGEKQRKKAAAAL QAAQAAAIQAQQTTQNAKMQSNPSAVEISGSDRINWNDNKVSSASAGSTAAPVFQGVFCRDLAAVGNLLSQGGFSRPIPMKYEALSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02100			Heat shock protein DnaJ with t...		Potri.014G122300 [exp]	0	1
AT2G17230		EXL5	EXORDIUM like 5 (.1)		Potri.004G206600 [exp]	1.41	0.8264
AT4G35470		PIRL4, DREB1C	plant intracellular ras group-...		Potri.005G098600 [exp]	8.48	0.7305
AT1G31850			S-adenosyl-L-methionine-depend...		Potri.003G102400 [exp]	9.16	0.7747
AT1G47740			PPPDE putative thiol peptidase...		Potri.004G151200 [exp]	18.11	0.7560
AT1G43580			Sphingomyelin synthetase famil...		Potri.002G066900 [exp]	20.32	0.7582
AT2G05840		PAA2	20S proteasome subunit PAA2 (....		Potri.016G139600 [exp]	20.73	0.7793	PAA1.4
AT5G43960			Nuclear transport factor 2 (NT...		Potri.010G065500 [exp]	20.78	0.7315
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Potri.001G360700 [exp]	21.72	0.6494
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Potri.004G084000 [exp]	25.49	0.7514
AT1G78770		APC6	anaphase promoting complex 6 (...		Potri.011G108800 [exp]	26.49	0.7162

Compare expression of checked genes

Potri.014G122300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.