Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02110 383 / 2e-112 transcription coactivators (.1) AT1G67180 68 / 2e-11 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) AT1G77320 63 / 1e-09 MEI1 meiosis defective 1, transcription coactivators (.1.2) AT4G21070 52 / 3e-06 ATBRCA1 ARABIDOPSIS THALIANA BREAST CANCER SUSCEPTIBILITY1, breast cancer susceptibility1 (.1) AT2G41450 48 / 4e-05 N-acetyltransferases;N-acetyltransferases (.1.2) AT4G14700 47 / 7e-05 ORC1, ATORC1A, ORC1A origin recognition complex 1 (.1) AT3G01460 46 / 0.0002 MBD9, ATMBD9 methyl-CPG-binding domain 9 (.1) AT5G24330 45 / 0.0003 SDG34, ATXR6 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G197400 [exp] 1699 / 0 AT4G02110 374 / 6e-110 transcription coactivators (.1) Potri.004G106000 [exp] 66 / 1e-10 AT1G67180 237 / 3e-72 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) Potri.005G182500 [exp] 63 / 1e-09 AT1G77320 1011 / 0.0 meiosis defective 1, transcription coactivators (.1.2) Potri.005G058000 [exp] 53 / 9e-07 AT5G09790 481 / 2e-170 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) Potri.003G126600 [exp] 54 / 1e-06 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.007G109900 [exp] 51 / 5e-06 AT5G09790 473 / 1e-167 SETDOMAIN GROUP 15, PIGMENT DEFECTIVE 336, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 5 (.1.2) Potri.012G018300 [exp] 50 / 6e-06 AT5G24330 480 / 3e-171 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.015G009632 [exp] 49 / 1e-05 AT5G24330 483 / 1e-172 SET DOMAIN PROTEIN 34, ARABIDOPSIS TRITHORAX-RELATED PROTEIN 6 (.1) Potri.006G277400 [exp] 49 / 2e-05 AT2G19260 169 / 4e-46 RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001455 [exp] 545 / 6e-173 AT4G02110 372 / 1e-108 transcription coactivators (.1) Lus10010017 [exp] 419 / 4e-128 AT4G02110 365 / 3e-108 transcription coactivators (.1) Lus10025038 [exp] 415 / 5e-127 AT4G02110 368 / 1e-109 transcription coactivators (.1) Lus10002432 [exp] 315 / 2e-98 AT4G02110 240 / 7e-72 transcription coactivators (.1) Lus10002431 [exp] 268 / 9e-78 AT4G02110 184 / 2e-49 transcription coactivators (.1) Lus10034088 [exp] 79 / 1e-14 AT1G67180 250 / 2e-76 zinc finger (C3HC4-type RING finger) family protein / BRCT domain-containing protein (.1) Lus10008495 [exp] 53 / 2e-06 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10000854 [exp] 50 / 2e-05 AT1G77320 796 / 0.0 meiosis defective 1, transcription coactivators (.1.2) Lus10031279 [exp] 49 / 4e-05 AT4G14700 1015 / 0.0 origin recognition complex 1 (.1) Lus10008796 [exp] 49 / 4e-05 AT3G01460 1574 / 0.0 methyl-CPG-binding domain 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0459 [poplar] [flax] BRCT-like PF00533 [poplar] [flax] BRCT BRCA1 C Terminus (BRCT) domain CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0459 [poplar] [flax] BRCT-like PF12738 [poplar] [flax] PTCB-BRCT twin BRCT domain
Representative CDS sequence Show only first row Show all	>Potri.014G122400.1 pacid=42762513 polypeptide=Potri.014G122400.1.p locus=Potri.014G122400 ID=Potri.014G122400.1.v4.1 annot-version=v4.1 ATGCTGGAAACCGATTCCCCTTCCAAAACGTTTCTCGGAGTTCGTTTCGTTCTCGTTGGTTTTGATCCCGTCAACAAATCCAAGGTTAAATCAAAGCTTG TTGGCGGCGGCGGCATCGATGCTGTTCAGTATAGCGAGAATTGCACTCACGTCATTGTCGATAAAATAGTTTATGATGATCCTGTATGTGTTGGTGCAAG AAATGATGGAAAGACAGTTGTGACAGGATTATGGGTTGATCATAGTTTTGATATTGGGATGCCTGTTGATGCCACTTCTATTATGTATCGACCGCTTAGA GATTTGAATGGAATTCCGGGTGCCAAGAATTTAATTATGTGCTTGACTGGGTACCAACGCCAAGATCGAGATGACATTATGACTATGGTTGGTCTGATGG GGGCACAGTTTTCTAAGCCACTGGTGGCTAACAAAGTTACTCATCTCATCTGCTACAAATTTGAAGGTGAGAAGTATCTGCTTGCCAATAAAATGAAGAA GATAAAGCTTGTTAATCATCGTTGGTTGGAAGAAAGCTTAAGAAATTGGGAGCTTCTTCCAGAAGACAATTATAGCAAGAGTGGCTATGAGTTGGAAATG CTGGAAGCTGAGGCAAAAGACTCTGAGGATGAAGCTCAAGGCACCAGTGTGAAGCAACCAAGTTATGAAAATGCGGATAAGAGTCCTCAGAATTTAAAAG CTGGAACGTTTAAGGCTTGTGAAATGCCCAAAACTGGGGAAGTGCAGAAAATATCACATAATTTGAGTGAGCCTGAAGGTCTATCAAGCGTTGTCAATGC TAAAGATATCTTAGTAACTCCTGGCAAAAGGAGCAGAGATGATCATGCTTCAGGCTTTGATAATATTTGCGTTTCTGAGGTGCCTGGCCATCTGGATGTT GGTGGCTTCAAAGGTGCCACTTCCAATGACTTACCTGGTACACAAGGGAGAACTCCTCTTTCTACAAGAACGAGTAAAGACTTGGAGTTTATTTCTAGAA GTGTTGAAAGGCCTTCTCACTCTGATGCGAAATATAGCACTACAAGTTACACAAGGAGAACTCCACAAATATCCCCATCATCAATCTTCTCTGGGAACTC GGGAAATATCAGAGGCTCTCCTAAAGTTCTCTTAGGTGAATCCATCAATATGTCTTCTGCCAAAGCAGAATATGCAAAGGACACAACAAGCCCTTCTTGT GCTGAAATTCCTCGAAAAGGAATTGAATTACTTTATGAAGAAGCACCAGGAAGTAAGAAGCAAAAGACAGATGTTTCGTGTTCTAGCTCTAAATCACAGA AGATGAATCATGATGCCCAGGCATATGTCACAGGGAGTCCATCAGCTACTTACACAAGTCAAGGTTTAGAACCAACACCTTTGGTGGATGGTCCGTCTAG GATTAATAACCGCTCTCCCCTCAGCAATGATGGCCACTCTGTGCATGATATGATTGGTATGAATGCTCAGCAGAACCCACATACCAATTTTTCAACAGCC AAGTCATCAAAATTTAGAAGGAACCCGTTCACAGAAGATCATGCTTTCCTTGAAAATATGATCTTGAAAACTGGAGAAAATGAGAACACAAATAAGAATA CACCACAACCATCCTTCAGGGACTTGACAAAGGACATCTTGGTCAGCGGGCATGACAGTGGAGGTTTTGTTGTCGAAAGATCTGAACAGGTGATTGCAGA AGCAGGGGAACCACAAAATTGGCAACAGGATGGAGGGGGTCCGTTTACACATAATAAGGGATTAGAGACAGATAAATCTGACATGCTTTCTAATTTGAAC GTGCCTCAGGCAGGAAATGATAACTCCATTACCAAGCCAGCTAGGAAGAAGATGATTGCCAAGAAGACTTTGGGTTCTAGACCAAAACTGACAAGTAATG TGAGCCAGAAAGGTTCCATATACTTAAATGTAACTGATGCTCAAAATGATCCTACAGTTGGTATGGCTAAGGGAAAAGGGAGAGTGGAGAACAGGAGTTC CACTGATGCCACTGAGCTAGAGATATCCCCTGCAACTGTCAATGCTGCAGAAGCACAAGTGATGGAGACAGAACGTGCCACAAAATTGGGGGATAAGTTG GGAGATAATGCTGTGGATAAGATTGGTTTCGCGGATGATGAAACTGAGGCTCCAGAGGAGGAAGATGAATGTGAAATTTTGCACAATGACGAGCAGATTG ATGTGATTGATTTGTCAAATAAAGCAGATAATAAGACAGGAATGAAATTGGAAGCAGATAATTCTGCAGCTAACATGAGTGATGGTCCAGCAGAAGGAAA TAATGCAATTGAAATACAAGAGAGAGACGGATCAGCCTTGAAAGAAGGTTTTGTAAAAGGAAAAGGAAGCAGAGGCAAGAAACAGCCTTCTGGTAAGACG AAGACCAAGACTGTTACCTCGGTTGTTAAAAAAGCTGAGTCTAAGAAAGTTCTGGACGAGGAAGAGAATCTTAATGGAAAGAACATTGAGGAGAATGCTG CAGAAAAGGAAAGCACTGAGCCATGTCCTGCAGGTCAAGCTAAAAGTAAAATTGTATCTAGGAAAAAGTCCAAGAACCCCGTGGAAGCTGAAAAGGAGAA TAAGCCTGCTGTTGATGGAGATCAATATGCAAGTCTAGATGATAAGCATGTTGGGGAAACAGCTGCTAATGCAAGTAAAACACCAACGAAGTTTAATCAA AAGGTTAGTAAAAGTAATCCTGGTTCTACACCAGGAAGAGAAGTTACAAAGCAACTGAAAACTGAACCGCTATGGTTTATATTGAGTGGGAATAGGATGC AAAGAAAGGAGCATCAGCAAGTTATTAGGCGTTTGAAAGGAAAATTCTGCAGAGATTCTCATCAATGGTCATATCAGGCAACACACTTCATAGCTCCAGA CCCAATTCGCAGGACAGAGAAGTTTTTTGCTGCTGCAGCATCTGGAAGGTGGATTCTTAGGTCGGATTATCTAAATGCTTGTAGTCAGGCAGGGAGGTTC TTGGCAGAGGAATCTTATGAATGGCACAAGAATAGCCTTAGCGAAGATGGAACAATTAATTTAGAAGCTCCAAGGAAGTGGCGGCTGTTAAGGGAGAGAA CAGGTCATGGAGCCTTCTATGGAATGCATATTATCATTTATGGAGAATGCATTACACCACCTTTGGATACTCTGAAACGAGTAGTGAAGGCGGGGGATGG TACCATCTTAGCAACCTCTCCTCCTTACACCCGCTTTCTTACATCTGGAGTTGACTATGCTATTGTCAGCCCTGGCATAACACGTGTAGACATGTGGGTT CAAGAGTTCTTAAGACATAAGATACCCTGCATTGTTGCTGATTACCTGGTGGAGTATGTCTGCAAGCCTGGGTACTCTCTTGAGAGACATGTACTGTACA ATACCAATGACTGGGCAGAGAAGTCATTTTCCAACCTTTTGAGCAAGGCGGAAGAGATTGTTGAGGATTGTGATAGTGGTGATGATATAGCCTGTGAAGT TTGTGGTTCTAGAGAAAGAGGGGAAGTTATGCTGATATGCAGCGATGAAAGTGGTTCTGTTGGATGTGGGGTTGGGATGCATATAGACTGCTGCGATCCT CCACTTGAAAGCATACCAGAGGAGGATTGGTTTTGTCCGAAGTGTAGCGGAAGCAGTAAGAGAACCAGCCCTAGGAAGAAAAGGATGAAAAAGGCACTTC ACTAA
AA sequence Show only first row Show all	>Potri.014G122400.1 pacid=42762513 polypeptide=Potri.014G122400.1.p locus=Potri.014G122400 ID=Potri.014G122400.1.v4.1 annot-version=v4.1 MLETDSPSKTFLGVRFVLVGFDPVNKSKVKSKLVGGGGIDAVQYSENCTHVIVDKIVYDDPVCVGARNDGKTVVTGLWVDHSFDIGMPVDATSIMYRPLR DLNGIPGAKNLIMCLTGYQRQDRDDIMTMVGLMGAQFSKPLVANKVTHLICYKFEGEKYLLANKMKKIKLVNHRWLEESLRNWELLPEDNYSKSGYELEM LEAEAKDSEDEAQGTSVKQPSYENADKSPQNLKAGTFKACEMPKTGEVQKISHNLSEPEGLSSVVNAKDILVTPGKRSRDDHASGFDNICVSEVPGHLDV GGFKGATSNDLPGTQGRTPLSTRTSKDLEFISRSVERPSHSDAKYSTTSYTRRTPQISPSSIFSGNSGNIRGSPKVLLGESINMSSAKAEYAKDTTSPSC AEIPRKGIELLYEEAPGSKKQKTDVSCSSSKSQKMNHDAQAYVTGSPSATYTSQGLEPTPLVDGPSRINNRSPLSNDGHSVHDMIGMNAQQNPHTNFSTA KSSKFRRNPFTEDHAFLENMILKTGENENTNKNTPQPSFRDLTKDILVSGHDSGGFVVERSEQVIAEAGEPQNWQQDGGGPFTHNKGLETDKSDMLSNLN VPQAGNDNSITKPARKKMIAKKTLGSRPKLTSNVSQKGSIYLNVTDAQNDPTVGMAKGKGRVENRSSTDATELEISPATVNAAEAQVMETERATKLGDKL GDNAVDKIGFADDETEAPEEEDECEILHNDEQIDVIDLSNKADNKTGMKLEADNSAANMSDGPAEGNNAIEIQERDGSALKEGFVKGKGSRGKKQPSGKT KTKTVTSVVKKAESKKVLDEEENLNGKNIEENAAEKESTEPCPAGQAKSKIVSRKKSKNPVEAEKENKPAVDGDQYASLDDKHVGETAANASKTPTKFNQ KVSKSNPGSTPGREVTKQLKTEPLWFILSGNRMQRKEHQQVIRRLKGKFCRDSHQWSYQATHFIAPDPIRRTEKFFAAAASGRWILRSDYLNACSQAGRF LAEESYEWHKNSLSEDGTINLEAPRKWRLLRERTGHGAFYGMHIIIYGECITPPLDTLKRVVKAGDGTILATSPPYTRFLTSGVDYAIVSPGITRVDMWV QEFLRHKIPCIVADYLVEYVCKPGYSLERHVLYNTNDWAEKSFSNLLSKAEEIVEDCDSGDDIACEVCGSRERGEVMLICSDESGSVGCGVGMHIDCCDP PLESIPEEDWFCPKCSGSSKRTSPRKKRMKKALH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02110			transcription coactivators (.1...		Potri.014G122400 [exp]	0	1
AT2G31160		OBO1, LSH3	ORGAN BOUNDARY 1, LIGHT SENSIT...		Potri.010G070700 [exp]	3.31	0.7060
AT1G68130	C2H2ZnF	IDD14beta, IDD1...	indeterminate(ID)-domain 14 (....		Potri.010G101200 [exp]	6.16	0.6984
AT2G27990	HD	PNF, BLH8	POUND-FOOLISH, BEL1-like homeo...		Potri.009G009900 [exp]	7.74	0.6653
AT5G65170			VQ motif-containing protein (....		Potri.005G076600 [exp]	12.48	0.6979
AT3G23290		LSH4	LIGHT SENSITIVE HYPOCOTYLS 4, ...		Potri.008G167700 [exp]	14.49	0.6084
AT2G37960			unknown protein		Potri.016G109100 [exp]	14.49	0.6214
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.013G072800 [exp]	19.69	0.6779
AT1G32550		FdC1	ferredoxin C 1, 2Fe-2S ferredo...		Potri.003G176400 [exp]	22.29	0.5859
AT2G27930			PLATZ transcription factor fam...		Potri.001G212400 [exp]	25.69	0.6342
AT5G15210	ZF_HD	ATHB30, ZFHD3, ...	ZINC FINGER HOMEODOMAIN 8, ZIN...		Potri.008G086000 [exp]	26.72	0.6590

Compare expression of checked genes

Potri.014G122400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.