Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62600 565 / 0 ATERDJ3B DNAJ heat shock family protein (.1) AT2G20560 174 / 1e-51 DNAJ heat shock family protein (.1) AT5G22060 175 / 4e-51 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT5G01390 171 / 1e-50 DNAJ heat shock family protein (.1.2.3.4) AT3G08910 171 / 2e-50 DNAJ heat shock family protein (.1) AT1G10350 162 / 6e-47 DNAJ heat shock family protein (.1) AT5G25530 162 / 9e-47 DNAJ heat shock family protein (.1) AT4G28480 159 / 3e-46 DNAJ heat shock family protein (.1.2) AT3G44110 160 / 2e-45 ATJ3 DNAJ homologue 3 (.1.2) AT1G59725 157 / 4e-45 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G198000 [exp] 653 / 0 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1) Potri.009G015700 [exp] 180 / 4e-53 AT3G44110 629 / 0.0 DNAJ homologue 3 (.1.2) Potri.008G018800 [exp] 174 / 8e-51 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.017G016100 [exp] 169 / 1e-49 AT2G20560 420 / 7e-148 DNAJ heat shock family protein (.1) Potri.010G243100 [exp] 170 / 4e-49 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.002G141100 [exp] 166 / 1e-47 AT3G44110 504 / 3e-178 DNAJ homologue 3 (.1.2) Potri.018G034600 [exp] 163 / 2e-47 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.011G057601 [exp] 162 / 9e-47 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1) Potri.007G136700 [exp] 159 / 9e-46 AT2G20560 416 / 5e-146 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014584 [exp] 566 / 0 AT3G62600 521 / 0.0 DNAJ heat shock family protein (.1) Lus10032100 [exp] 554 / 0 AT3G62600 526 / 0.0 DNAJ heat shock family protein (.1) Lus10003651 [exp] 552 / 0 AT3G62600 509 / 0.0 DNAJ heat shock family protein (.1) Lus10022297 [exp] 550 / 0 AT3G62600 522 / 0.0 DNAJ heat shock family protein (.1) Lus10027803 [exp] 170 / 7e-50 AT3G08910 504 / 0.0 DNAJ heat shock family protein (.1) Lus10005033 [exp] 169 / 1e-49 AT3G08910 503 / 0.0 DNAJ heat shock family protein (.1) Lus10017687 [exp] 169 / 2e-49 AT2G20560 551 / 0.0 DNAJ heat shock family protein (.1) Lus10041254 [exp] 160 / 2e-46 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1) Lus10021961 [exp] 160 / 2e-46 AT5G25530 468 / 7e-167 DNAJ heat shock family protein (.1) Lus10013981 [exp] 160 / 3e-46 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0392 [poplar] [flax] PF01556 [poplar] [flax] DnaJ_C DnaJ C terminal domain
Representative CDS sequence Show only first row Show all	>Potri.014G122600.1 pacid=42763974 polypeptide=Potri.014G122600.1.p locus=Potri.014G122600 ID=Potri.014G122600.1.v4.1 annot-version=v4.1 ATGGAGCATCAGCATCGAAGATCAAAGATCTTATTGTTATTATGCGTGGCTCTATCATACTACGCTATCATCGCCATTGCAGGGAAGAGCTATTACGAAG TTCTGCAAGTGCCTAAAGGTGCATCAGACGAGCAGATCAAAAAAGCGTATAGAAAGCTAGCTTTGAAGTATCATCCTGATAAGAATCAGGGAAATGAAGA GGCTAATTTGCGTTTTGCCGAGATTAACAATGCGTATGAGGTGTTATCGGATAGTGAGAAGAGGAATATTTACGATAGGTATGGAGAGGAGGGACTTAAG CAGCATATGGCTAGTGGAGGCAGAGGTGGTGGAGGAGGAATGAATTTTCAAGACATTTTTAGCCAATTTTTTGGTGGAGGTTCGATGGAAGAGGAAGAGA AAATCGCTAGGGGTGATGATGTAATTGTAGAATTGGATGCAACACTGGAAGACCTGTATATGGGTGGTTCGCTGAAGGTCTGGAGGGAAAAAAATGTTAT AAAGCCAGCCCCTGGCAAAAGACGCTGTAACTGCAGAAATGAAGTTTACCACAAGCAAATTGGTCCAGGGATGTTTCAGCAGATGACAGAGCAGGTCTGT GAGCAATGTCAAAATGTCAAATATGAAAGGGAGGGATATTTTCTCACAGTTGATATTGAGAAAGGCATGCAAGATGGACAAGAGGTGGTTTTCTATGAAG ATGGTGAGCCTATAATTGATGGAGAACCTGGAGATTTGAAGTTCCGAATTCGCACAGCACCCCATGACATCTTCAGAAGAGAAGGCAATGACTTGCATAC AACTGTCACCATAACACTGGTTCAAGCGCTTGTTGGTTTTGAGAAGAACATTGAGCATCTTGATGAGCATTTGGTGGACATTAGCTCGAAGGGAATCACC AAACCCAAAGAAGTAAGAAGGTTCAAGGGGGAGGGAATGCCTTTGCATTTCAGCACCAAGAACGGTGATCTTTATGTCACGTTTGAGGTTCTTTTCCCCA CATCACTAACTGAAGACCAGAAGAAAAGGATCAAGGAAGTTCTTGGCTAG
AA sequence Show only first row Show all	>Potri.014G122600.1 pacid=42763974 polypeptide=Potri.014G122600.1.p locus=Potri.014G122600 ID=Potri.014G122600.1.v4.1 annot-version=v4.1 MEHQHRRSKILLLLCVALSYYAIIAIAGKSYYEVLQVPKGASDEQIKKAYRKLALKYHPDKNQGNEEANLRFAEINNAYEVLSDSEKRNIYDRYGEEGLK QHMASGGRGGGGGMNFQDIFSQFFGGGSMEEEEKIARGDDVIVELDATLEDLYMGGSLKVWREKNVIKPAPGKRRCNCRNEVYHKQIGPGMFQQMTEQVC EQCQNVKYEREGYFLTVDIEKGMQDGQEVVFYEDGEPIIDGEPGDLKFRIRTAPHDIFRREGNDLHTTVTITLVQALVGFEKNIEHLDEHLVDISSKGIT KPKEVRRFKGEGMPLHFSTKNGDLYVTFEVLFPTSLTEDQKKRIKEVLG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62600		ATERDJ3B	DNAJ heat shock family protein...		Potri.014G122600 [exp]	0	1
AT5G16760		AtITPK1	inositol \(1,3,4\) P3 5/6-kina...		Potri.001G140000 [exp]	1.00	0.7281
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.005G232900 [exp]	2.82	0.7151	XBCP3.1
AT5G06660			Protein of unknown function DU...		Potri.016G060300 [exp]	8.83	0.7130
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Potri.010G205800 [exp]	13.03	0.6400
AT3G10940		LSF2	LIKE SEX4 2, dual specificity ...		Potri.019G048600 [exp]	14.14	0.6722
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Potri.008G003200 [exp]	14.96	0.6599	ATFYPP3.2
AT1G17530		ATTIM23-1	translocase of inner mitochond...		Potri.001G198100 [exp]	16.97	0.6566	ATTIM23.2
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.005G253400 [exp]	18.00	0.6492
AT4G19450			Major facilitator superfamily ...		Potri.001G128200 [exp]	18.33	0.6429
AT1G64750		DSS1(I), ATDSS1...	deletion of SUV3 suppressor 1(...		Potri.001G334600 [exp]	18.97	0.6316

Compare expression of checked genes

Potri.014G122600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.