Plant FIBer expression Database

Potri.014G123000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G55010 520 / 0 EMB2818, ATPURM, PUR5 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G198600
[exp]
672 / 0 AT3G55010 526 / 0.0 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10040931
[exp]
558 / 0 AT3G55010 532 / 0.0 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
Lus10009823
[exp]
540 / 0 AT3G55010 522 / 0.0 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
Lus10039497
[exp]
510 / 0 AT3G55010 489 / 4e-175 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
Lus10024142
[exp]
468 / 2e-162 AT3G55010 439 / 3e-151 EMBRYO DEFECTIVE 2818, phosphoribosylformylglycinamidine cyclo-ligase, chloroplast / phosphoribosyl-aminoimidazole synthetase / AIR synthase (PUR5)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF00586 AIRS AIR synthase related protein, N-terminal domain
PF02769 AIRS_C AIR synthase related protein, C-terminal domain
Representative CDS sequence
>Potri.014G123000.1 pacid=42763809 polypeptide=Potri.014G123000.1.p locus=Potri.014G123000 ID=Potri.014G123000.1.v4.1 annot-version=v4.1
ATGGCCACTACTAGCATAGCATCAAACACTGAGCTATCGCGTGTTGTTGCAGTTTCCATCAGACCCTCTTCCAATAAACCCCTGGTCACTCATCAATCCA
TCGGAAGATACTCCTTTAGTCGCTTTTCTAATGGATTTCCTCTTCTATCAGTGAGAGCTACAAGCAATAGTTCGATGTCCAAGGAAAATAGCAGCAAAAG
CTGTGACGGGGCTGGTGGAAGACTTACATATAAGGATGCTGGTGTGGATATAGATGCTGGGTCTGAGCTTATTAGGCGAATTGCAAAGATGGCTCCTGGA
ATTGGTGGATTTGGTGGTCTTTTCCCTCTTGGCGATTCGTACCTTGTTGCAGGTACGGATGGTGTAGGGACTAAGCTAAAGCTTGCATTTGAAACCGGAA
TCCATGAAACCATTGGGATTGATCTGGTTGCTATGAGTGTGAACGATATCGTTACTTCCGGTGCAAAGCCCTTATTTTTCCTTGATTACTATGCTACAAG
CCGCCTTAATGTTGATCTTGCTGAAAAGGTCATTAAAGGCATAGTTGGTGGTTGTCAACAATCGGACTGCACTCTTTTAGGGGGAGAGACTGCAGAGATG
CCAGATTTCTATGCAGAAGGTGAGTATGACCTTAGCGGGTTTGCTGTTGGCATTGTTAAAAAGGACTCGGTGATTGATGGGAAAAACATTGTGGCTGGGG
ATGTTCTCATTGGTTTGCCATCAAGTGGAGTCCATTCCAATGGTTTCTCTCTCGTAAGAAGGGTTCTAGCTCAAAGTGGCCTATCTTTGAATGACCAACT
TCCTGGTGGAAGTGTTTCATTGGGCGAAGCTCTAATGGCTCCAACTGTTATCTATGTCAAGCAGGTGCTTGACTTGATTAGCAAGGGTTGTGTAAAGGGC
ATAGCTCACATCACTGGAGGTGGTTTTACAGATAACATACCAAGAGTTTTCCCAAAAGGCCTTGGAGCTTCCATATACAAGGAGTCATGGGAAGTCCCAA
CCCTTTTCAAATGGATCCAAGAGGCTGGAAGAATAGAAGATGCTGAGATGAGTCGGACTTTTAACATGGGCATTGGGATGGTTCTGGTCGTGACTGAGGA
AGCATCCCACAAAATTCTCGAGGAGGGACAACACAAGGCATATCGCATTGGCGAGGTTGTATGTGGTGAAGGAGTGAGATATTGCTAA
AA sequence
>Potri.014G123000.1 pacid=42763809 polypeptide=Potri.014G123000.1.p locus=Potri.014G123000 ID=Potri.014G123000.1.v4.1 annot-version=v4.1
MATTSIASNTELSRVVAVSIRPSSNKPLVTHQSIGRYSFSRFSNGFPLLSVRATSNSSMSKENSSKSCDGAGGRLTYKDAGVDIDAGSELIRRIAKMAPG
IGGFGGLFPLGDSYLVAGTDGVGTKLKLAFETGIHETIGIDLVAMSVNDIVTSGAKPLFFLDYYATSRLNVDLAEKVIKGIVGGCQQSDCTLLGGETAEM
PDFYAEGEYDLSGFAVGIVKKDSVIDGKNIVAGDVLIGLPSSGVHSNGFSLVRRVLAQSGLSLNDQLPGGSVSLGEALMAPTVIYVKQVLDLISKGCVKG
IAHITGGGFTDNIPRVFPKGLGASIYKESWEVPTLFKWIQEAGRIEDAEMSRTFNMGIGMVLVVTEEASHKILEEGQHKAYRIGEVVCGEGVRYC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G55010 EMB2818, ATPURM... EMBRYO DEFECTIVE 2818, phospho... Potri.014G123000
[exp]
0 1
AT2G18050 HIS1-3 histone H1-3 (.1.2) Potri.007G014200
[exp]
2.64 0.8489 HON905,HIS1.1
AT1G61670 Lung seven transmembrane recep... Potri.006G109000
[exp]
2.82 0.8851
AT5G12840 CCAAT NF-YA1, ATHAP2A... "nuclear factor Y, subunit A1"... Potri.001G257600
[exp]
6.32 0.8472
AT3G03305 Calcineurin-like metallo-phosp... Potri.008G077000
[exp]
6.92 0.8355
AT2G22540 MADS AGL22, SVP SHORT VEGETATIVE PHASE, AGAMOU... Potri.005G155300
[exp]
12.00 0.8251
AT2G32170 S-adenosyl-L-methionine-depend... Potri.016G021400
[exp]
12.16 0.8751
AT1G78650 POLD3 DNA-directed DNA polymerases (... Potri.001G387300
[exp]
12.24 0.8507
AT2G32170 S-adenosyl-L-methionine-depend... Potri.016G021900
[exp]
12.36 0.8765
AT3G12130 C3HZnF KH domain-containing protein /... Potri.006G191900
[exp]
15.81 0.8543
Potri.005G130601
[exp]
16.24 0.8030

Potri.014G123000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.