Plant FIBer expression Database

Potri.014G123100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G26400 54 / 6e-08 EIF4B1 eukaryotic translation initiation factor 4B1 (.1)
AT1G13020 50 / 1e-06 EIF4B2 eukaryotic initiation factor 4B2 (.1)
AT4G38710 45 / 5e-05 glycine-rich protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G198700
[exp]
342 / 8e-118 AT3G26400 50 / 1e-06 eukaryotic translation initiation factor 4B1 (.1)
Potri.008G185400
[exp]
48 / 6e-06 AT3G26400 325 / 5e-105 eukaryotic translation initiation factor 4B1 (.1)
Potri.010G048200
[exp]
47 / 9e-06 AT3G26400 349 / 1e-114 eukaryotic translation initiation factor 4B1 (.1)
Potri.004G169100
[exp]
44 / 0.0001 AT4G38710 149 / 1e-40 glycine-rich protein (.1.2)
Potri.009G130200
[exp]
42 / 0.0003 AT4G38710 192 / 1e-56 glycine-rich protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10036874
[exp]
56 / 2e-08 AT3G26400 355 / 4e-117 eukaryotic translation initiation factor 4B1 (.1)
Lus10011412
[exp]
54 / 9e-08 AT3G26400 387 / 3e-129 eukaryotic translation initiation factor 4B1 (.1)
Lus10006224
[exp]
53 / 3e-07 AT3G26430 342 / 5e-111 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Lus10006469
[exp]
52 / 3e-07 AT3G26400 205 / 1e-61 eukaryotic translation initiation factor 4B1 (.1)
Lus10012166
[exp]
47 / 1e-05 AT4G38710 159 / 2e-44 glycine-rich protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF06273 eIF-4B Plant specific eukaryotic initiation factor 4B
Representative CDS sequence
>Potri.014G123100.1 pacid=42764321 polypeptide=Potri.014G123100.1.p locus=Potri.014G123100 ID=Potri.014G123100.1.v4.1 annot-version=v4.1
ATGGTGGATAGAGAAATAAAAAACGGCTCTGCAGCTTTTTCGTGGGCAGATGAGGTTGAGAAAGAAGAGGAAGAACAAGCTCGGTTTCAGGAGAACCAGA
AGCAGAAACCAAACCCTTTTGGCTCTGCCAGGCCCAGAGAAGTTGTTCTCCAGGAAAAAGGAATTGATTGGAGAAAACTCGACTTCCATCTTCAACTACC
TTCTCACATAAGGCAGCTGGATGATCCGAAGCTATGTAAGGAAAAAATCCCTGCCTCTGCTGCTCCCGGTATCGACAGGATACATTCAGTTACCCCTAGC
AAGTGCCTAAAACATGAAATGGAAGATGCCAATTCGGACTTGAAAAGAGGTGAAATTTTGCGGATACCTTTGGCTGTGCAGAACCAGAATCCTGTACCAT
TCGTACCTCCTCTAAGATATCCACCTAAAAATGTCATTCCTAGTTTGTCTGAGTCTGGCTTTCATTATTATCTACATGAATTGAGCGATGGGCAGCAAGA
TTTTAAAAACAAGAAGCCCCTGAAGCCCGAGAAAGAGAATGCATTTCATCAGCAAGGGTCCCAAAGGGTTTATTGCTCTCAAAATAATCGTGGAAGCCAC
ATTCTTCCTCACTATCATCGGCAAATATTGCAAGCTGAGCAAGGGAGCCAGTTTAAGGAGAATTACGAAAATTTCAAACTGGGGCAATCAGTTGTTAATG
GGAAGAACTTGAGGAAAACAGCAGCTAGTAGAATACAGCATTCAGATTCAGCTATTGAGAGACCTTGCAAAAATCTTCAAGAAGATTACGCAGTTAGTCA
TGGGGTTAGGCAGAGCTTGACAGACCACTCATGTGCTGGAGGTACAAGCATCAAACAGAAGAATGGCCTGGAAAGATCTGTTGCCAAGAGATCAAGTGGC
ACAGAATTCAGTTTGATGGCAGGAGAGGCATGGAACCAAAGTCTGGTAGTAAAAAAAATAAAAGGCGGCGAGATGAAGGGGAACTAG
AA sequence
>Potri.014G123100.1 pacid=42764321 polypeptide=Potri.014G123100.1.p locus=Potri.014G123100 ID=Potri.014G123100.1.v4.1 annot-version=v4.1
MVDREIKNGSAAFSWADEVEKEEEEQARFQENQKQKPNPFGSARPREVVLQEKGIDWRKLDFHLQLPSHIRQLDDPKLCKEKIPASAAPGIDRIHSVTPS
KCLKHEMEDANSDLKRGEILRIPLAVQNQNPVPFVPPLRYPPKNVIPSLSESGFHYYLHELSDGQQDFKNKKPLKPEKENAFHQQGSQRVYCSQNNRGSH
ILPHYHRQILQAEQGSQFKENYENFKLGQSVVNGKNLRKTAASRIQHSDSAIERPCKNLQEDYAVSHGVRQSLTDHSCAGGTSIKQKNGLERSVAKRSSG
TEFSLMAGEAWNQSLVVKKIKGGEMKGN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G26400 EIF4B1 eukaryotic translation initiat... Potri.014G123100
[exp]
0 1
AT4G12540 unknown protein Potri.013G040800
[exp]
1.73 0.9443
AT3G26400 EIF4B1 eukaryotic translation initiat... Potri.002G198700
[exp]
2.00 0.9439
AT5G42700 B3 AP2/B3-like transcriptional fa... Potri.014G031600
[exp]
2.82 0.9264
AT5G45700 Haloacid dehalogenase-like hyd... Potri.011G072000
[exp]
3.46 0.9354
AT5G56120 unknown protein Potri.011G167900
[exp]
4.00 0.8928
AT1G68350 unknown protein Potri.008G122700
[exp]
6.32 0.9107
AT3G25980 MAD2 MITOTIC ARREST-DEFICIENT 2, DN... Potri.008G179600
[exp]
7.74 0.8944
AT4G12540 unknown protein Potri.005G053300
[exp]
9.53 0.9121
AT3G48160 E2F_DP E2FE, E2L3, DEL... E2F-LIKE 3, DP-E2F-like 1 (.1.... Potri.015G070300
[exp]
10.81 0.9077
AT4G18760 AtRLP51 receptor like protein 51 (.1) Potri.004G059500
[exp]
12.40 0.8952

Potri.014G123100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.