Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02120 918 / 0 CTP synthase family protein (.1) AT3G12670 788 / 0 EMB2742 embryo defective 2742, CTP synthase family protein (.1) AT1G30820 765 / 0 CTP synthase family protein (.1) AT4G20320 763 / 0 CTP synthase family protein (.1.2) AT2G34890 723 / 0 CTP synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G176500 [exp] 803 / 0 AT3G12670 935 / 0.0 embryo defective 2742, CTP synthase family protein (.1) Potri.008G080100 [exp] 802 / 0 AT3G12670 929 / 0.0 embryo defective 2742, CTP synthase family protein (.1) Potri.003G157900 [exp] 796 / 0 AT1G30820 910 / 0.0 CTP synthase family protein (.1) Potri.001G073100 [exp] 786 / 0 AT1G30820 901 / 0.0 CTP synthase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025042 [exp] 748 / 0 AT4G02120 689 / 0.0 CTP synthase family protein (.1) Lus10001218 [exp] 714 / 0 AT1G30820 894 / 0.0 CTP synthase family protein (.1) Lus10038403 [exp] 714 / 0 AT1G30820 897 / 0.0 CTP synthase family protein (.1) Lus10010020 [exp] 683 / 0 AT4G02120 624 / 0.0 CTP synthase family protein (.1) Lus10025043 [exp] 229 / 7e-72 AT4G02120 289 / 1e-96 CTP synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF06418 [poplar] [flax] CTP_synth_N CTP synthase N-terminus CL0014 [poplar] [flax] Glutaminase_I PF07722 [poplar] [flax] Peptidase_C26 Peptidase C26
Representative CDS sequence Show only first row Show all	>Potri.014G123200.1 pacid=42764534 polypeptide=Potri.014G123200.1.p locus=Potri.014G123200 ID=Potri.014G123200.1.v4.1 annot-version=v4.1 ATGTATAAATACGCATTCCTTAGCAAGTCCCTAAGCGCCGTCCGCTCACCCCTCGCAGGTTTGTTGAGATTCGAAAGCATCTCCACGAAAATCAAGCTAC GCAACTACAGCTTTCCCGCTCGGACATTAACTCAAACACTTTGTCTACACACAAATACTCAGAATTTATCCAGTTACCACCCAACCCAAAGCCAACAGAG AGAAATGAAGTATGTCCTAGTCACCGGAGGAGTTGTCAGTGGGCTCGGCAAGGGCGTCACCGCTAGCAGCATCGGCGTTGTCCTTAAAGCTTGCGGCCTC CGCGTCACCTCCATCAAAATAGATCCTTACTTGAATACTGATGCTGGCACCATGTCTCCTTTTGAGCATGGGGAGGTTTTTGTTCTTGACGATGGCGGAG AGGTTGATTTAGACTTGGGTAACTACGAGCGTTTTCTGGACGTGACACTAACCAAAGATAATAACATTACCACTGGGAAGATATTTCAGTCTGTCATCGA GAAGGAAAGGAGAGGCGATTATCTTGGAAAGACTGTTCAGGTCGTTCCACATATCACTGATGCAATTAAGGATTGGATCGAGTCTGTTTCTGCCATTCCT GTGGATGGAAAGGATGGCCCTGCTGATGTGTGTGTTATAGAATTGGGAGGCACAGTGGGTGACATTGAATCTATGCCATTTATTGAGGCTTTGCGACAGT TGTCATTTTCAGTTGGACAAGATAACTTTTGTCTCGTTCATGTGAGCCTGATACCCGTACTAGGCGTTGTTGGAGAGCAAAAAACTAAGCCTACACAACA TAGTGTCCGTGAATTGAGAGCATTAGGCTTGACTCCTCATCTGCTGGCATGTCGCTCTGCTCAGCCTTTATTGGAAAATACGAAGGAGAAACTTTCGCAG TTCTGCCATGTTCCGGCTGCTAATATTCTCAATATTCATGATGTTCCTAACATTTGGCACGTCCCTCTGTTACTTAGGAACCAAAATGCTCATGATGCAA TTTTAAAACAGCTAAACTTACTCAGCATTGCAATGCCTCCTGCTTTACAAGATTGGACCATGATGGCTGAGACTTATGATAATCTCACCAATTCTGTGAG GATTGCGATGGTGGGAAAGTATGTTGGCCTAACAGATTCATACCTGTCTGTTGTTAAGGCCCTTCTACATGCTTGCATCGCATGTTCGTTGAAGCCATCG ATTGATTGGATTGCAGCTTCTGATCTTGAAGAAGACAGTGCAGAATCGACACCAGAAGCACATGCAGCTGCATGGGAGACTTTAAAGAATGCATCATGCA TCTTAATTCCTGGTGGATTTGGAGATCGTGGGGTGAGAGGAATGATATTGGCTTCCAAGTATGCTAGAGAGAACAATATTCCTTATCTTGGGATTTGCTT AGGCATGCAGATTGCTGTTATTGAGTTTGCTAGATCTGTTTTGGGTTTGGAAAGGGCGGATAGCAATGAGTTCGATACAAATACACCTGATCCTGTTGTA ATTTTCATGCCTGAGGGTTCAAGGACACATATGGGAAGCACAATGAGACTAGGATCACGAAGGACGCTATTCCAGACCCCTGATTGTATTACTGCAAAAT TGTATGGTAATACTCAGTATGTAGAGGAACGACACAGACATAGATATGAGGTAAACCCAGAGGTTATTGAAGTTCTAGAGGAAAAGGGCTTAAAGTTTGT TGGGAAGGATGAAACAGGAAAACGGATGGAGATTTTAGAGCTTCCAACTCATCCTTTTTATGTAGGTGTGCAATTTCACCCAGAGTTCAAATCACGGCCT AGAAGGCCCTCTGCTCTTTTCTTAGGTTTTATATTGGCAGCAACAGGAAAGTTGGAAGCACATCTCAAGAGTCATCAAAATGGAGTTTGA
AA sequence Show only first row Show all	>Potri.014G123200.1 pacid=42764534 polypeptide=Potri.014G123200.1.p locus=Potri.014G123200 ID=Potri.014G123200.1.v4.1 annot-version=v4.1 MYKYAFLSKSLSAVRSPLAGLLRFESISTKIKLRNYSFPARTLTQTLCLHTNTQNLSSYHPTQSQQREMKYVLVTGGVVSGLGKGVTASSIGVVLKACGL RVTSIKIDPYLNTDAGTMSPFEHGEVFVLDDGGEVDLDLGNYERFLDVTLTKDNNITTGKIFQSVIEKERRGDYLGKTVQVVPHITDAIKDWIESVSAIP VDGKDGPADVCVIELGGTVGDIESMPFIEALRQLSFSVGQDNFCLVHVSLIPVLGVVGEQKTKPTQHSVRELRALGLTPHLLACRSAQPLLENTKEKLSQ FCHVPAANILNIHDVPNIWHVPLLLRNQNAHDAILKQLNLLSIAMPPALQDWTMMAETYDNLTNSVRIAMVGKYVGLTDSYLSVVKALLHACIACSLKPS IDWIAASDLEEDSAESTPEAHAAAWETLKNASCILIPGGFGDRGVRGMILASKYARENNIPYLGICLGMQIAVIEFARSVLGLERADSNEFDTNTPDPVV IFMPEGSRTHMGSTMRLGSRRTLFQTPDCITAKLYGNTQYVEERHRHRYEVNPEVIEVLEEKGLKFVGKDETGKRMEILELPTHPFYVGVQFHPEFKSRP RRPSALFLGFILAATGKLEAHLKSHQNGV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02120			CTP synthase family protein (....		Potri.014G123200 [exp]	0	1
AT3G09040			Pentatricopeptide repeat (PPR)...		Potri.005G187800 [exp]	1.41	0.8557
AT3G07750			3'-5'-exoribonuclease family p...		Potri.014G166200 [exp]	2.00	0.8196
AT3G63510			FMN-linked oxidoreductases sup...		Potri.009G059900 [exp]	3.74	0.8361
AT3G04480			endoribonucleases (.1)		Potri.019G019600 [exp]	4.35	0.7609
AT4G00620		EMB3127	EMBRYO DEFECTIVE 3127, Amino a...		Potri.002G157100 [exp]	4.58	0.8217
AT4G31120		PRMT5, SKB1 ,AT...	PROTEIN ARGININE METHYLTRANSFE...		Potri.018G000500 [exp]	6.48	0.8157
AT3G05340			Tetratricopeptide repeat (TPR)...		Potri.013G021100 [exp]	6.48	0.8019
AT2G05120			Nucleoporin, Nup133/Nup155-lik...		Potri.002G221300 [exp]	7.34	0.7982
AT4G30700			Pentatricopeptide repeat (PPR)...		Potri.016G077700 [exp]	8.94	0.8167
AT3G27740		VEN6, CARA	VENOSA 6, carbamoyl phosphate ...		Potri.001G153400 [exp]	12.80	0.6903

Compare expression of checked genes

Potri.014G123200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.