Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61710 42 / 6e-05 unknown protein AT4G02160 41 / 0.0001 unknown protein AT5G38700 39 / 0.0008 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G199100 [exp] 178 / 7e-57 AT4G02160 50 / 9e-08 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025039 [exp] 68 / 2e-14 AT5G61710 51 / 2e-08 unknown protein Lus10010018 [exp] 59 / 3e-11 AT4G02160 43 / 7e-06 unknown protein Lus10010019 [exp] 40 / 0.0006 AT5G38700 164 / 8e-52 unknown protein Lus10025041 [exp] 39 / 0.0007 AT5G38700 150 / 2e-46 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [poplar] [flax] DUF761 Cotton fibre expressed protein
Representative CDS sequence Show only first row Show all	>Potri.014G123500.1 pacid=42763094 polypeptide=Potri.014G123500.1.p locus=Potri.014G123500 ID=Potri.014G123500.1.v4.1 annot-version=v4.1 ATGGAACATCGATCAGGTGCTGTCATTGATATTTTCAGTACAGTTACCGACAACGGAGGCCATCGAGATGGCGTCGACCCAAAGCCGACGAAGAAAAAGC GGAGTCCAATGCACATCCTTAGGGTGGCAAATTATATGCTCTCTCTAAAATCTGGCAAATCAAAAACTGCCCACACCGATGCTGTCTCAAAGTGGAAGAA ACTCTTGTCTTCCATGCGCCCTTTGCACATTAACAGCAACCAATCAGCCCAACGTAGCATTGGGGACAGGGCACCGATGGCACCTTTAACATCCAAGGAG GTTGTTGAACAATCAAAGGTTTATGCACCTTCCGCGGCATCCGAGGATGTTGAACAATTTGAGCTTTTTACCCCACCTTGGTCACCGGCCCCAAAAAGCA CAGGATCATCGTCTGGTCAAACTAGCCAATACGCATCGGCCCAAAATCTTCAAGAGCTTGATGATCAGAGCGATGAAGATGATGAGGATAGTTATTATGA TGATAAATTCGGGGACGAAAAGATAGACATGAAGGCTGAGGAGTTCATTGCTAAATTTTATGGCCAAATGAAGCTTCAACATAAGATTTGA
AA sequence Show only first row Show all	>Potri.014G123500.1 pacid=42763094 polypeptide=Potri.014G123500.1.p locus=Potri.014G123500 ID=Potri.014G123500.1.v4.1 annot-version=v4.1 MEHRSGAVIDIFSTVTDNGGHRDGVDPKPTKKKRSPMHILRVANYMLSLKSGKSKTAHTDAVSKWKKLLSSMRPLHINSNQSAQRSIGDRAPMAPLTSKE VVEQSKVYAPSAASEDVEQFELFTPPWSPAPKSTGSSSGQTSQYASAQNLQELDDQSDEDDEDSYYDDKFGDEKIDMKAEEFIAKFYGQMKLQHKI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61710			unknown protein		Potri.014G123500 [exp]	0	1
AT4G13830		J20	DNAJ-like 20 (.1.2)		Potri.005G078801 [exp]	1.41	0.9780
AT4G21410		CRK29	cysteine-rich RLK (RECEPTOR-li...		Potri.011G028800 [exp]	5.00	0.9712
AT4G26200		ACS7, ATACS7	1-amino-cyclopropane-1-carboxy...		Potri.006G149600 [exp]	7.14	0.9793	ACS6,ACS3.1
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.005G060300 [exp]	7.74	0.9677
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038401 [exp]	9.74	0.9665
AT1G11050			Protein kinase superfamily pro...		Potri.005G181800 [exp]	11.74	0.9744
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.005G060200 [exp]	13.56	0.9662
AT2G26730			Leucine-rich repeat protein ki...		Potri.012G078100 [exp]	18.08	0.9537
AT2G40070			unknown protein		Potri.010G177000 [exp]	21.56	0.9571
					Potri.003G071050 [exp]	22.80	0.9696

Compare expression of checked genes

Potri.014G123500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.