Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G47900 441 / 2e-152 Protein of unknown function (DUF1624) AT5G27730 373 / 4e-125 Protein of unknown function (DUF1624) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G071500 [exp] 442 / 1e-152 AT5G47900 519 / 0.0 Protein of unknown function (DUF1624) Potri.003G159200 [exp] 433 / 6e-149 AT5G47900 492 / 1e-172 Protein of unknown function (DUF1624) Potri.013G016900 [exp] 396 / 2e-134 AT5G27730 669 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.006G122500 [exp] 388 / 1e-130 AT5G27730 521 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.009G136700 [exp] 372 / 9e-126 AT5G47900 395 / 2e-135 Protein of unknown function (DUF1624) Potri.004G176400 [exp] 368 / 4e-124 AT5G47900 400 / 2e-137 Protein of unknown function (DUF1624) Potri.005G025200 [exp] 349 / 5e-116 AT5G27730 595 / 0.0 Protein of unknown function (DUF1624) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010030 [exp] 652 / 0 AT5G47900 433 / 2e-149 Protein of unknown function (DUF1624) Lus10020653 [exp] 370 / 5e-124 AT5G27730 624 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10036333 [exp] 351 / 5e-119 AT5G47900 269 / 6e-89 Protein of unknown function (DUF1624) Lus10021514 [exp] 342 / 1e-112 AT5G27730 540 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10027468 [exp] 335 / 3e-111 AT5G47900 380 / 9e-130 Protein of unknown function (DUF1624) Lus10022615 [exp] 338 / 4e-111 AT5G27730 532 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10039223 [exp] 326 / 4e-108 AT5G47900 349 / 1e-117 Protein of unknown function (DUF1624) Lus10019798 [exp] 298 / 3e-97 AT5G47900 329 / 5e-110 Protein of unknown function (DUF1624) Lus10014112 [exp] 226 / 1e-68 AT5G47900 237 / 4e-74 Protein of unknown function (DUF1624) Lus10000090 [exp] 161 / 1e-46 AT5G47900 174 / 5e-54 Protein of unknown function (DUF1624)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0316 [poplar] [flax] Acyl_transf_3 PF07786 [poplar] [flax] DUF1624 Protein of unknown function (DUF1624)
Representative CDS sequence Show only first row Show all	>Potri.014G123800.1 pacid=42764678 polypeptide=Potri.014G123800.1.p locus=Potri.014G123800 ID=Potri.014G123800.1.v4.1 annot-version=v4.1 ATGTCTAGTATGATCGCAGTTACGACAACAGAATTAGATGAACGACAACGAGAACCCCTTCTACACAATCCCCGTTCGCTTTCCAATGAAGAAGAAGAAG AGATCACCAACACGCCTTCAACCTCATCATCCAACGCATCGCCACTACCAACTCAACGCCTCCTTTCTCTCGACGTTTTCCGTGGCCTTACCGTCGCTCT CATGATTTTAGTTGATGATGCTGGTGGAGCTTTTCCTTGTATTAATCACTCTCCGTGGTTTGGTGTGACGCTTGCCGATTTTGTGATGCCTTTTTTCCTC TTTGTTGTTGGTGTCTCTATCAGTTTAGTTTTTAAGAAAGTATCTAGCAAACCAATGGCCACAAAGAAAGTCATACAGAGGACTATCAAACTATTTCTTT TGGGATTATTGTTGCAAGGTGGGTATTTCCATGGACGCCACAATTTAACATACGGGGTTGATGTGGGCAAGATACGTTGGATGGGCGTGCTACAGAGGAT ATCCATTGGATATCTCTTTGCTGCAATGTCAGAGATCTGGCTTGTGGACAGTATCACGGTCGACTCACCTATGGCTTTTGTGAAGAAATACTACATCCAA TGGATGGTTGCTTTCTTATTTTGCACATTTTACATGTGCTTGCTGTATGGCCTTTATGTTCCAGACTGGGAATTCGAAGTTCCAAGCACAAATCTGTTTG AATATGAATTTGGTACTAAAATTGTGAATTGTGGAGTGAGGGGCAGTCTTGAACCTCCTTGTAATGCAGTTGGTCTGATTGACCGATTTTTTCTTGGTGA ACATCATCTATATCAACATCCTGTGTATAGAAGAACAAAGCATTGTAGTGTTAATTCTCCTGACTATGGACCTCTGCCACCAAATTCACCTGGGTGGTGC CTTGCTCCATTTGACCCAGAGGGCATCTTGAGTTCTTTGATGGCTGCTATTACATGTTTTCTTGGATTGCAGTTTGGTCATATCCTTGTTCATTTCAAGG GCCACATGCAAAGGCTGTGTTTGTGGTCTGTGTGTTCTTTCATCATACTAATTACTGGATATGTTTTTGAGCTTCTGGGCGTTCCTCTTTGTAAACCATT ATATACATTGAGCTATATGTGCATTACAGCTGGAGCATCAGGCTTGGCTTTAACGATCATCTTTTATATAGTTGATGTCAAGCATTTTAGAAAGCCCACG ATGATACTTCAGTGGATGGGAATGAATGCACTCATCATTTATGCGCTGGCTGCCTGTGACCTTTTCCCAGCAGCCATTCAAGGTTTCTATTGGGGTTCAC CAGAAAACAACTTGGTTGATGATACAGAATCGCTGTTCCAAGTCATGCTCCATTCAAAGAAGTGGGGCACCCTTGTTTTTGTAATTGTGGAGATTTTATT CTGGGGCCTTGTGGCTGGTTTCCTACATTTGAAAGGCATTTATGTGAGACTGTGA
AA sequence Show only first row Show all	>Potri.014G123800.1 pacid=42764678 polypeptide=Potri.014G123800.1.p locus=Potri.014G123800 ID=Potri.014G123800.1.v4.1 annot-version=v4.1 MSSMIAVTTTELDERQREPLLHNPRSLSNEEEEEITNTPSTSSSNASPLPTQRLLSLDVFRGLTVALMILVDDAGGAFPCINHSPWFGVTLADFVMPFFL FVVGVSISLVFKKVSSKPMATKKVIQRTIKLFLLGLLLQGGYFHGRHNLTYGVDVGKIRWMGVLQRISIGYLFAAMSEIWLVDSITVDSPMAFVKKYYIQ WMVAFLFCTFYMCLLYGLYVPDWEFEVPSTNLFEYEFGTKIVNCGVRGSLEPPCNAVGLIDRFFLGEHHLYQHPVYRRTKHCSVNSPDYGPLPPNSPGWC LAPFDPEGILSSLMAAITCFLGLQFGHILVHFKGHMQRLCLWSVCSFIILITGYVFELLGVPLCKPLYTLSYMCITAGASGLALTIIFYIVDVKHFRKPT MILQWMGMNALIIYALAACDLFPAAIQGFYWGSPENNLVDDTESLFQVMLHSKKWGTLVFVIVEILFWGLVAGFLHLKGIYVRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G47900			Protein of unknown function (D...		Potri.014G123800 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.010G231200 [exp]	2.44	0.7428
AT1G50440			RING/FYVE/PHD zinc finger supe...		Potri.010G252900 [exp]	3.87	0.6635
AT3G04790		EMB3119	EMBRYO DEFECTIVE 3119, Ribose ...		Potri.006G039700 [exp]	4.89	0.6860
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125200 [exp]	4.89	0.7170
AT1G12680		PEPKR2	phosphoenolpyruvate carboxylas...		Potri.017G048400 [exp]	6.32	0.7293
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.004G063500 [exp]	14.66	0.6966	RKF1.1
AT3G14250			RING/U-box superfamily protein...		Potri.001G037200 [exp]	16.73	0.6733
AT3G18670			Ankyrin repeat family protein ...		Potri.011G015750 [exp]	18.76	0.7028
AT3G18670			Ankyrin repeat family protein ...		Potri.006G281600 [exp]	20.78	0.6917
					Potri.006G276250 [exp]	20.97	0.6561

Compare expression of checked genes

Potri.014G123800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.