Plant FIBer expression Database

Potri.014G124300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G13030 112 / 5e-27 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G199700
[exp]
709 / 0 AT4G13030 125 / 9e-32 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Potri.002G247400
[exp]
109 / 1e-25 AT4G13030 292 / 8e-93 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10025900
[exp]
117 / 3e-28 AT4G13030 277 / 4e-85 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Lus10038204
[exp]
82 / 4e-18 AT4G13030 133 / 1e-36 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence
>Potri.014G124300.1 pacid=42762309 polypeptide=Potri.014G124300.1.p locus=Potri.014G124300 ID=Potri.014G124300.1.v4.1 annot-version=v4.1
ATGGTAGAAAGATCAAACTGTTCAATTTCAAAAGTCCAAAATAAAATAAAATTACTGCCACCTTTTTTGCTGAAGTTGAGTCCCAAAGACATGAAGAGTC
AGCTCTCTTCCAATGATGAAGATGAGTGCCAATTGTCAAGACTGGGCTACTGTTGGTGGAGATCGGCAGCAAAGTTCGATGAATGTGTTAGGCTTAAGCT
TGACCTCCCTCACATCGCAAGCCTTACACCAAGACTCAGAGTTCTTAAAGAGTTGGAGAGACTGGCTTTGATTGCTCATGAAGGACTCAATGAGCTCAGA
TACAAGCTACAAATGTATCGTTCAGGTGATTTCTGGGTGCCCACAGGAGGTCTCAAGAAGGAAGAGATGGACATTCCACCAGTAATCACTATTCTCTTGG
TGGGTTTCTCTGGCTCTGGCAAGAGCTCACTTGTGAACCTTATGTACAGTGTTTTTGGTCGGTCTGGACTCATACCTTTTGCTCGAACTTCATCTGGCGG
TGCTACCAAATACACCACCATGTACATGGAAGAGCACAATGTAATGAGATCAATGCAAGGTGGGTTTTGTGTGTACGATTCTAGGGGGTTTAATTATGGT
AAAATTGGTGATGCTCTTGAGGAATTGTCAAGTTGGATGAGTGATGGGATTCACCATAACCAGCTGTGCCTGAGATCAGGTGATGATGTATTGCTGGAAG
CCGACACAGAAACTGTTGGTTTGAGGTCATCTTCAAAGTTTGTACAAAGGACAGTAAATATTCCAATGGTGGTGGTTAACATAGCAGAGGTCCATAAAGC
CTCAAAAGCTAGTGATTCGAAGCCATTAGAAGCCACAAGAGAACTCTTCCACTCCCCTGCTTTGAGAAAATGCAACGAGAATCCTATCTTGATCCTGACA
CATGGTGACTTGTTGACAACCGAAGAGAGGATGGACATGAGGCTCAGATTATGCGAGCGTCTAGGAATATCAGAGACTAATGGAGTGTATGACATTGTTT
GCCTCACAGAATATGGATTTCTCGCAGAAGAATCTGATCCGGTTACAGCGTATGCCTTAGCTGAAGCTGTATACAGGGCATTGCTCATCTCAGACAGGGG
GCATTCTCCAAAGAAAAACCTCCAGGACTGGGCATTGTTCGTATTGTCATGGTTAATGTGCTTCATGGGTGCTCTCTTCTCCTTCCTCGCTGATCTTTGC
TCAAAACTTGGACAGAGGGATAGGTTGAAGCACTGA
AA sequence
>Potri.014G124300.1 pacid=42762309 polypeptide=Potri.014G124300.1.p locus=Potri.014G124300 ID=Potri.014G124300.1.v4.1 annot-version=v4.1
MVERSNCSISKVQNKIKLLPPFLLKLSPKDMKSQLSSNDEDECQLSRLGYCWWRSAAKFDECVRLKLDLPHIASLTPRLRVLKELERLALIAHEGLNELR
YKLQMYRSGDFWVPTGGLKKEEMDIPPVITILLVGFSGSGKSSLVNLMYSVFGRSGLIPFARTSSGGATKYTTMYMEEHNVMRSMQGGFCVYDSRGFNYG
KIGDALEELSSWMSDGIHHNQLCLRSGDDVLLEADTETVGLRSSSKFVQRTVNIPMVVVNIAEVHKASKASDSKPLEATRELFHSPALRKCNENPILILT
HGDLLTTEERMDMRLRLCERLGISETNGVYDIVCLTEYGFLAEESDPVTAYALAEAVYRALLISDRGHSPKKNLQDWALFVLSWLMCFMGALFSFLADLC
SKLGQRDRLKH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G13030 P-loop containing nucleoside t... Potri.014G124300
[exp]
0 1
AT4G05180 PSII-Q, PSBQ, P... photosystem II subunit Q-2 (.1... Potri.011G031300
[exp]
4.12 0.9652 Pt-PSBQ2.2
AT2G30570 PSBW photosystem II reaction center... Potri.002G044300
[exp]
6.16 0.9644
AT2G36250 ATFTSZ2-1, FTSZ... Tubulin/FtsZ family protein (.... Potri.009G164100
[exp]
8.30 0.9353 Pt-FTSZ2.2
AT1G74730 Protein of unknown function (D... Potri.012G070600
[exp]
8.66 0.9640
AT5G54190 PORA protochlorophyllide oxidoreduc... Potri.001G403300
[exp]
10.24 0.9468 PORA.2
AT1G08380 PSAO photosystem I subunit O (.1) Potri.009G160800
[exp]
10.67 0.9568
AT1G15820 CP24, LHCB6 light harvesting complex photo... Potri.001G210000
[exp]
10.95 0.9583 Pt-LHCB6.2,1
AT5G12080 ATMSL10, MSL10 mechanosensitive channel of sm... Potri.006G144100
[exp]
11.13 0.9591
AT2G34430 LHCB1.4, LHB1B1 light-harvesting chlorophyll-p... Potri.011G079500
[exp]
14.24 0.9563 Lhcb1-1,Pt-LHB1.2
AT2G47140 AtSDR5 short-chain dehydrogenase redu... Potri.015G065600
[exp]
14.49 0.9493

Potri.014G124300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.