Plant FIBer expression Database

Potri.014G124800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.014G124800.2 pacid=42763125 polypeptide=Potri.014G124800.2.p locus=Potri.014G124800 ID=Potri.014G124800.2.v4.1 annot-version=v4.1
ATGATTAACCCCAGCTCCCTATCAGTATCATTCTTAATTCTCTTCATTTTGCACACCGATTACTTTTCATCAACCACATCGAACATTACAGGAGTTTCCA
AGGACCAAATACAATGTACAATGTGCTCTGCCTGTGAAAACCCATGTCAACCCCTTCCATCTACTCCTCCACCACCACCCCCTGTCTCCACTTGTCCGCC
TCCGCCAGCGGTTGTCTCAGGCTCCCCACCGCCACCATCAATGCCAAATTCAGGCACAATTTACTACTCGCCACCGCCACCATCAATGCCCAATTCAGGC
ACAATTTACTACTCGCCACCGCCACCTAATTCAGTGCCCACGTACGCGTACTCCCCTCCGCCACCACCTGCTGATGTTGCTGGATTTTATCCGCCGCCAA
GATATGGTAACTATCCAGCGCCTCCGCCACCGAACCCTATACTTCCTTACTTTCCATTCTATTATTATAACCCTCCACCATCGTCTTCTCCTAACTCTGT
TCTCTTGAAAATGAACCCCATTGTTTTTTTCATTTTTCTTCTTCTTTCTTTCTTTCCTCTGTTGCTTCTAAATTGA
AA sequence
>Potri.014G124800.2 pacid=42763125 polypeptide=Potri.014G124800.2.p locus=Potri.014G124800 ID=Potri.014G124800.2.v4.1 annot-version=v4.1
MINPSSLSVSFLILFILHTDYFSSTTSNITGVSKDQIQCTMCSACENPCQPLPSTPPPPPPVSTCPPPPAVVSGSPPPPSMPNSGTIYYSPPPPSMPNSG
TIYYSPPPPNSVPTYAYSPPPPPADVAGFYPPPRYGNYPAPPPPNPILPYFPFYYYNPPPSSSPNSVLLKMNPIVFFIFLLLSFFPLLLLN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.014G124800
[exp]
0 1
AT3G55470 Calcium-dependent lipid-bindin... Potri.010G203100
[exp]
8.88 0.8722
AT4G37160 SKS15 SKU5 similar 15 (.1) Potri.007G038200
[exp]
14.69 0.8701
AT1G14870 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1... Potri.012G092200
[exp]
19.18 0.8518
AT3G10720 Plant invertase/pectin methyle... Potri.008G011100
[exp]
25.51 0.8521
AT3G60530 GATA GATA4 GATA transcription factor 4 (.... Potri.014G058600
[exp]
28.37 0.8497
AT1G50720 Stigma-specific Stig1 family p... Potri.001G356600
[exp]
31.36 0.8419
AT2G43480 Peroxidase superfamily protein... Potri.007G132800
[exp]
32.03 0.8400
AT5G54370 Late embryogenesis abundant (L... Potri.012G145400
[exp]
35.29 0.8432
AT1G03220 Eukaryotic aspartyl protease f... Potri.008G203200
[exp]
37.41 0.8019
AT1G53130 GRI GRIM REAPER, Stigma-specific S... Potri.011G118600
[exp]
37.62 0.8469

Potri.014G124800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.