Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62660 597 / 0 GATL7 galacturonosyltransferase-like 7 (.1) AT1G02720 552 / 0 GATL5 galacturonosyltransferase 5 (.1.2) AT4G02130 543 / 0 GATL6, LGT10 galacturonosyltransferase 6 (.1.2.3) AT1G70090 450 / 2e-158 GATL9, LGT8 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) AT1G24170 436 / 1e-152 GATL8, LGT9 GALACTURONOSYLTRANSFERASE-LIKE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G28340 414 / 8e-145 GolS8, GATL10 galactinol synthase 8, galacturonosyltransferase-like 10 (.1) AT3G06260 397 / 3e-138 GolS9, GATL4 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) AT1G13250 387 / 2e-134 GATL3 galacturonosyltransferase-like 3 (.1) AT3G50760 376 / 3e-130 GATL2 galacturonosyltransferase-like 2 (.1) AT1G19300 363 / 6e-125 ATGATL1, GATL1, PARVUS, GLZ1 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G200200 [exp] 672 / 0 AT3G62660 593 / 0.0 galacturonosyltransferase-like 7 (.1) Potri.010G038300 [exp] 439 / 3e-154 AT1G70090 580 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.010G129400 [exp] 413 / 1e-144 AT1G13250 521 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G192600 [exp] 407 / 1e-141 AT1G70090 556 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Potri.008G116900 [exp] 403 / 1e-140 AT1G13250 509 / 0.0 galacturonosyltransferase-like 3 (.1) Potri.008G018100 [exp] 390 / 9e-136 AT3G06260 533 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Potri.014G040300 [exp] 389 / 7e-135 AT1G19300 489 / 1e-174 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.002G132900 [exp] 386 / 5e-134 AT1G19300 483 / 2e-172 PARVUS, GAOLAOZHUANGREN 1, GALACTURONOSYLTRANSFERASE-LIKE 1, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.007G031700 [exp] 382 / 2e-132 AT3G50760 459 / 5e-163 galacturonosyltransferase-like 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002440 [exp] 602 / 0 AT3G62660 597 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10010025 [exp] 570 / 0 AT3G62660 568 / 0.0 galacturonosyltransferase-like 7 (.1) Lus10029215 [exp] 435 / 7e-153 AT1G70090 543 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10010727 [exp] 433 / 4e-152 AT1G70090 546 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10030821 [exp] 425 / 1e-148 AT1G70090 533 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10013296 [exp] 422 / 1e-146 AT1G70090 534 / 0.0 GALACTURONOSYLTRANSFERASE-LIKE 9, glucosyl transferase family 8 (.1.2) Lus10012765 [exp] 410 / 2e-143 AT3G06260 519 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10000262 [exp] 410 / 5e-143 AT3G62660 405 / 2e-141 galacturonosyltransferase-like 7 (.1) Lus10034012 [exp] 406 / 1e-141 AT3G06260 522 / 0.0 galactinol synthase 9, galacturonosyltransferase-like 4 (.1) Lus10041489 [exp] 390 / 3e-135 AT1G13250 491 / 2e-175 galacturonosyltransferase-like 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.014G125000.1 pacid=42764093 polypeptide=Potri.014G125000.1.p locus=Potri.014G125000 ID=Potri.014G125000.1.v4.1 annot-version=v4.1 ATGCTTTGGATTCTACGATTCTCAGGCTTCTTCTCTGCCGCAGTTGTGATGATTATACTCTCTCCTTCTATCCAATCCTTCCCCCCAGCTGAGGCCATTC GCTCCTCCAATCTCGACGGCTACCTCCGTTTCCCCGTCCTCCCCTCCCCTCCCGATTACCTCCCTCAACTATCCTTCCGAAGGTCGACCATATTCCGCAA TGCTGATGAATGCCGCTTCTCTGCCCGCCAAATCAGGGGCAAAACCAGTGTCTGTGATCCTTCATTGGTTCACATAGCGATTACTCTCGATGTGGAGTAT CTTCGTGGTTCAATCGCGGCTGTTCACTCAATTTTGCTCAACTCTTTGTGTCCAGAGAATGTTTTCTTCCATTTCTTAGTCTCTGAGACCAATCTGGAAT CCCTAGTTCGATCCACTTTCCCTCAATTGAAGTTCAAAGTGTATTATTTCGATCCGGAGATTGTACGCAGCCTCATCTCGACTTCAGTTAGGCAAGCGCT TGAGCAGCCACTCAATTACGCCAGGAATTATTTGGCTGATTTGCTAGAGACCTGTGTTAAAAGAGTGATCTATTTAGACTCTGATCTTGTTGTCGTTGAT GATATCGCAAAGTTGTGGGCTACTAATTTGGGTTCTAGAACAATCGGAGCTCCAGAATATTGTCATGCCAACTTCACAAAGTATTTCACTTCGGGTTTCT GGTCTGATAAGCGGTTTTCAGGGGCATTTCGGGGGCGGAAACCCTGTTACTTTAACACTGGAGTGATGGTGATAGATCTGGTGAAATGGAGACATGCCCA ATATACGAAGTGGATTGAGAGGTGGATGGAGGTCCAGAAGAGTGACCGGATCTACGATTTGGGTTCCTTGCCGCCATATCTTTTGGTATTTGCGGGAAAT GTGGCGCCGATTGAGCACCGGTGGAACCAGCATGGGTTAGGTGGTGATAATGTGAGAGGTAGTTGCCGGGACTTGCATCCGGGTCCGTATAGTCTATTGC ATTGGTCAGGTAGCGGAAAGCCGTGGCTCAGGCTCGACTCAAAGCAACCGTGCCCTCTTGATTTCCTGTGGTCACCATACGATTTGTACGGACACTCGCG TTTATAA
AA sequence Show only first row Show all	>Potri.014G125000.1 pacid=42764093 polypeptide=Potri.014G125000.1.p locus=Potri.014G125000 ID=Potri.014G125000.1.v4.1 annot-version=v4.1 MLWILRFSGFFSAAVVMIILSPSIQSFPPAEAIRSSNLDGYLRFPVLPSPPDYLPQLSFRRSTIFRNADECRFSARQIRGKTSVCDPSLVHIAITLDVEY LRGSIAAVHSILLNSLCPENVFFHFLVSETNLESLVRSTFPQLKFKVYYFDPEIVRSLISTSVRQALEQPLNYARNYLADLLETCVKRVIYLDSDLVVVD DIAKLWATNLGSRTIGAPEYCHANFTKYFTSGFWSDKRFSGAFRGRKPCYFNTGVMVIDLVKWRHAQYTKWIERWMEVQKSDRIYDLGSLPPYLLVFAGN VAPIEHRWNQHGLGGDNVRGSCRDLHPGPYSLLHWSGSGKPWLRLDSKQPCPLDFLWSPYDLYGHSRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62660		GATL7	galacturonosyltransferase-like...		Potri.014G125000 [exp]	0	1
AT3G14920			Peptide-N4-(N-acetyl-beta-gluc...		Potri.011G109700 [exp]	5.09	0.8291
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.008G012400 [exp]	12.24	0.8599
AT3G57070			Glutaredoxin family protein (....		Potri.006G041800 [exp]	13.41	0.8172
AT1G51630			O-fucosyltransferase family pr...		Potri.010G250600 [exp]	13.60	0.8172
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.014G024700 [exp]	13.60	0.8508
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Potri.006G056300 [exp]	21.16	0.8530
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Potri.010G141600 [exp]	21.21	0.8575
AT1G10720			BSD domain-containing protein ...		Potri.014G014200 [exp]	21.35	0.8567
AT2G37040		PAL1, ATPAL1	PHE ammonia lyase 1 (.1)		Potri.010G224200 [exp]	29.12	0.8441
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Potri.003G151700 [exp]	29.49	0.8478	POPTRKOR2,KOR1.3

Compare expression of checked genes

Potri.014G125000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.