Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47490 449 / 8e-160 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) AT1G25380 347 / 4e-119 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT5G66380 160 / 6e-47 ATFOLT1 folate transporter 1 (.1) AT5G48970 116 / 5e-30 Mitochondrial substrate carrier family protein (.1) AT4G01100 110 / 2e-27 ADNT1 adenine nucleotide transporter 1 (.1.2) AT3G53940 108 / 1e-26 Mitochondrial substrate carrier family protein (.1) AT5G46800 104 / 8e-26 BOU A BOUT DE SOUFFLE, Mitochondrial substrate carrier family protein (.1) AT4G26180 101 / 2e-24 Mitochondrial substrate carrier family protein (.1) AT3G21390 100 / 3e-24 Mitochondrial substrate carrier family protein (.1) AT2G39970 100 / 5e-24 PXN, PMP38, APEM3 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G200900 [exp] 546 / 0 AT2G47490 471 / 1e-168 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.010G121500 [exp] 391 / 2e-136 AT1G25380 395 / 2e-137 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.008G123700 [exp] 365 / 3e-126 AT1G25380 417 / 8e-146 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Potri.007G019000 [exp] 147 / 7e-42 AT5G66380 463 / 8e-166 folate transporter 1 (.1) Potri.008G210000 [exp] 120 / 2e-31 AT5G48970 517 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.010G024100 [exp] 112 / 2e-28 AT5G48970 528 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.003G137500 [exp] 111 / 8e-28 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 110 / 1e-27 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G000200 [exp] 108 / 5e-27 AT2G39970 389 / 3e-135 peroxisomal NAD carrier, peroxisomal membrane protein 38, ABERRANT PEROXISOME MORPHOLOGY 3, Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001463 [exp] 421 / 1e-148 AT2G47490 415 / 1e-146 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Lus10034104 [exp] 364 / 2e-126 AT1G25380 414 / 3e-145 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10003041 [exp] 264 / 2e-88 AT1G25380 299 / 6e-102 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) Lus10028339 [exp] 125 / 6e-34 AT5G66380 384 / 2e-135 folate transporter 1 (.1) Lus10043022 [exp] 109 / 1e-26 AT5G51050 758 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10032522 [exp] 108 / 2e-26 AT5G51050 563 / 0.0 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 107 / 3e-26 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10032365 [exp] 104 / 2e-25 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033948 [exp] 103 / 5e-25 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 102 / 1e-24 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.014G125600.2 pacid=42763986 polypeptide=Potri.014G125600.2.p locus=Potri.014G125600 ID=Potri.014G125600.2.v4.1 annot-version=v4.1 ATGCCCACCACCGATTCTCATGCTCATGCCCCTACTAATCCCAAGCAATGTCTTCTCTGCAACGCCGGCGCTGGTGCTGCTGCAGGAGTTATTGCTGCTA CATTTGTGTGTCCTTTAGATGTTATCAAGACCAGGTTCCAGGTCCATGGTCTGCCTAAGTACGATGTTGCTACTAGTAGTATTAAAGGGAGTCTTATAGT TGGTAGTTTGGAACAAATATTTCGGAGGGAGGGGCTGCGCGGCATGTACCGGGGGCTTGCTCCAACTGTGCTAGCAATGCTTCCTAATTGGGCTGTTTAT TTTACGATATATGAACAGTTCAAAAGCTTTCTTTGTTCCAATGATGAAAGTCATCACCTTTCAATAGGTGCTAACATGATAGCTGCTTCTGGTGCTGGAG CGGCAACAACTATTTTCACAAATCCTCTTTGGGTTGTAAAGACAAGACTTCAAACTCAAGGAATGAGAGCAGGTATCGTTCCATATAGGAGTACACTGTC TGCTTTGAGAAGAATAGCTCATGAGGAAGGCATGCGTGGGTTGTACAGTGGTCTTGTGCCTGCATTGGCTGGTGTTAGTCATGTTGCCATCCAATTTCCA ACATATGAGAAGATCAAAATGTACTTGGCCACCCGAGGTAATACCACAATGGATAAACTAGGTGCACGTGATGTTGCTGTTGCCTCATCAGTCTCCAAAA TATTTGCTTCGACATTGACATATCCACATGAGGTAGTACGCTCAAGGCTTCAAGAACAAGGCTTCCACTCAGAAAAGCGTTACTCTGGTGTGGTTGATTG CATAAATAAAGTATTTCAACAAGAGGGTCTCCCTGGATTTTACCGTGGTTGTGCCACCAACCTTATTAGAACAACCCCCGCTGCTGTTATTACATTCACT AGCTTTGAGATGATTCACAGGTTTCTTGTCACCCTTTTCCTTCCTGATCCACAGCCTCACACATTGTGA
AA sequence Show only first row Show all	>Potri.014G125600.2 pacid=42763986 polypeptide=Potri.014G125600.2.p locus=Potri.014G125600 ID=Potri.014G125600.2.v4.1 annot-version=v4.1 MPTTDSHAHAPTNPKQCLLCNAGAGAAAGVIAATFVCPLDVIKTRFQVHGLPKYDVATSSIKGSLIVGSLEQIFRREGLRGMYRGLAPTVLAMLPNWAVY FTIYEQFKSFLCSNDESHHLSIGANMIAASGAGAATTIFTNPLWVVKTRLQTQGMRAGIVPYRSTLSALRRIAHEEGMRGLYSGLVPALAGVSHVAIQFP TYEKIKMYLATRGNTTMDKLGARDVAVASSVSKIFASTLTYPHEVVRSRLQEQGFHSEKRYSGVVDCINKVFQQEGLPGFYRGCATNLIRTTPAAVITFT SFEMIHRFLVTLFLPDPQPHTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Potri.014G125600 [exp]	0	1
AT2G20830			transferases;folic acid bindin...		Potri.013G145700 [exp]	1.00	0.8450
AT2G02410			unknown protein		Potri.003G046600 [exp]	4.89	0.8053
AT4G04830		ATMSRB5	methionine sulfoxide reductase...		Potri.008G198600 [exp]	12.96	0.7722	PtrMsrB3
AT1G04290			Thioesterase superfamily prote...		Potri.004G134132 [exp]	13.56	0.7876
AT1G06990			GDSL-like Lipase/Acylhydrolase...		Potri.008G076600 [exp]	16.49	0.7802
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Potri.007G134600 [exp]	17.26	0.8411
AT2G24395			chaperone protein dnaJ-related...		Potri.006G278250 [exp]	19.74	0.8286
AT1G25220		WEI7, TRP4, ASB...	WEAK ETHYLENE INSENSITIVE7, TR...		Potri.008G138800 [exp]	21.90	0.7554
AT4G32590			2Fe-2S ferredoxin-like superfa...		Potri.006G247300 [exp]	26.38	0.8275
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Potri.004G031800 [exp]	29.44	0.7936

Compare expression of checked genes

Potri.014G125600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.