Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47500 1219 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 962 / 0 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G09170 809 / 0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G44730 708 / 0 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT3G10310 541 / 2e-177 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G63640 525 / 2e-169 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) AT1G73860 521 / 8e-169 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G41310 499 / 6e-161 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT1G18410 502 / 3e-160 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G22610 343 / 1e-101 Di-glucose binding protein with Kinesin motor domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G201000 [exp] 1734 / 0 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.013G011500 [exp] 1152 / 0 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.005G021100 [exp] 1123 / 0 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.001G467600 [exp] 593 / 0 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 587 / 0 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.001G104000 [exp] 548 / 3e-178 AT1G63640 1102 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.003G127800 [exp] 533 / 4e-172 AT1G63640 1065 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.015G047400 [exp] 508 / 1e-163 AT1G63640 908 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Potri.012G056700 [exp] 498 / 1e-159 AT1G63640 857 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009851 [exp] 1316 / 0 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10029865 [exp] 959 / 0 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10015212 [exp] 868 / 0 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10020682 [exp] 800 / 0 AT1G09170 843 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10032897 [exp] 567 / 0 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10031058 [exp] 558 / 0 AT3G10310 880 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10010302 [exp] 541 / 0 AT2G47500 506 / 2e-171 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10032264 [exp] 534 / 4e-172 AT1G63640 991 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10024628 [exp] 525 / 2e-168 AT1G63640 980 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2) Lus10001306 [exp] 509 / 7e-164 AT3G44730 1240 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0188 [poplar] [flax] CH PF00307 [poplar] [flax] CH Calponin homology (CH) domain
Representative CDS sequence Show only first row Show all	>Potri.014G125700.1 pacid=42762393 polypeptide=Potri.014G125700.1.p locus=Potri.014G125700 ID=Potri.014G125700.1.v4.1 annot-version=v4.1 ATGGCTGGTGAAGGAGGAACATTGTCTTTTTCGGTGGCGTCCGTAGTGGAGGATGTGCTGCAGCAACATGGTAATAGACTCGGAGATCTCGATTTGGAGT CCAGGAAAGCTGAAGAAGCCGCATCAAGAAGGTATGAAGCTGCGGGGTGGTTGAGAAAGATGGTAGGAGTGGTTGCAGCTAAAGATTTGCCAGCAGAGCC ATCTGAAGAAGAGTTTAGGCTTGGATTGAGAAGTGGAATCATTCTTTGCAATGCTCTCAATAAGATACAACCCGGGGGTGTGCCTAAGGTCGTGGAGAGT CCATGCGATGCTGCTCCTATACCCGATGGAGCAGCATTATCTGCATTTCAGTACTTTGAAAATGTAAGAAATTTCCTTGTAGCGGTACAGGAGATGGGGA TTCCTAATTTTGAGGCATCTGATCTGGAACAAGGAGGAAAATCGGCAAGGGTTGTGAATACTGTTTTGGCACTTAAATCATACAGTGAGTGGAAACAAAC TGGTGGAAATGGGATTTGGAAATTTGGTGGAAATGTAAAACCGCCAGTGTCAGCCAAGTCTTTTGTAAGAAAAAATTCGGAACCATTCATGAACTCATTA TCCAGGAACTTGTCAATAAATGGAAAATCTTTCAACTCCCTGTCCAGTGATCTTGAGTACTCTAATAAAATGTCTGGGTCTGGTTCCTTGAGCATGCTTG TTCGTGCTGTTTTGTTGGATAAGAAGCCAGAAGAAGTTCCAATGTTGGTGGAATCAGTGCTCAGTAAGGTTGTGGAGGAATTTGAGAGTCGCATTGCAAG CCAATATGATATGGCAAAGGAAGCTCCTAAAGAAATAGCCATCTCTCAGGGAAACAAGTTTTTGCTGAAATCTACTGGTGATAATAAAAGGACTGAAGAC AAAAATGTCAGATTGATAAAGAAAGAGGAATGCTTTCATAAAAACCAAATTGCAGAGGAGGAATTAAAAAATAAAACCCAGAAACAGCAAATGATCTTTG ATAAACAACAAAGAGATATTCAGGAATTAAAAAACACGCTTAGTACAACAAAAGCTGGTATGCAGTTTATGCAAATGAAATTTCATGAGGAGTTTAACAG TCTTGGGATGCACATCCATGGTCTAGCTCATGCTGCTTCTGGCTACCATAAGGTTCTCGAGGAAAATCGAAAGCTATACAATCAAGTGCAGGACCTAAAG GGGAGTATTCGGGTTTATTGTCGAGTGAGACCATTTTTGTCTGGACAATCAAACGATTTGAGCACTGTGCATAGCATAGAAGATGGGAATATTACTATTA GCACCGCGTCAAAACATGGAAAAGGATGCAAGTCCTTTAGCTTCAATAAAGTCTTTGAACCATGTGCTACCCAAGCGGAGGTCTTCTCTGATATGCAGCC ATTAATCCGGTCTGTTCTTGATGGCTACAATGTTTGCATATTTGCATATGGTCAAACAGGATCAGGAAAAACATACACCATGACAGGGCCCAAAGATCTC AGTGAGAAAAACAAAGGTGTAAATTATAGGGCATTGGGTGATTTGTTTCTTCTAGCAGAGCAAAGGAAGGACATCTTCTGCTACAACGTTGCTGTACAAA TGATAGAGATTTACAATGAGCAAGTCAGGGATCTCCTTGTTACTGATGGAAGTAACAAAAGATTAGAAATTCGTAACAGTTCTCAAACAGGTCTGAATGT ACCGGATGCAAACATCATTCCTGTATCATCAACACATGATGTTATTGATCTAATGAACCTTGGACACAGGAATCGTGCAGTAGGTGCAACAGCCCTTAAT GATCGTAGTAGTCGCTCGCATAGTTGCCTGACTGTCCATGTTCAAGGAAGAGACTTAGCATCCGGAACTATTCTCCGTGGCTGTATGCATCTGGTTGATT TGGCAGGGAGTGAAAGAGTAAACAAATCTGAAGTGACCGGAGACAGACTAAAAGAAGCACAACACATTAACAAATCCCTATCAGCTTTGGGTGATGTCAT CGCTTCCCTTGCCCAGAAGAATCAACATGTACCTTATAGAAATAGCAAACTTACACAACTGCTCCAAGACTCACTTGGAGGGCAAGCCAAGACACTGATG TTTGTTCACATAAGCCCTGAGCCTGATGCTTTAGGAGAAACAATTAGTACATTGAAGTTTGCTGAGAGGGTAGCCACTGTGGAACTTGGTGCAGCTCAGG TGAACAAGGGCAGTACAGATGTTAAAGAACTCAAAGAACAAATTGCTAATCAAAAGGCAGCATTAGCAAAAAAAGAGAGAGAAACGGAACACAGAAGAAA AGGAAGTGAATCATCACCATCCAATTCTAACCATCGGCTCAGAGATGCAAATGATAGCAATCTCTTCCGGCAACCAATGGGTGATGTGGGCAACATAGAG GTTCACAAATCTACTCTGAGGCAGAAGAGACAAAGCTTTGATCTTGATGAGATATTAGCAAATTCACCTCCGTGGCCTCCAGTCATTAGCCCTAGTCTAA ATTATGCTGAGGATGAGAAGGAAATGGCCTCGGGTGAGTGGGTAGATAAAGTCATGGTAAACAAACAGGATGCAGTAAACATGGTTGAAAAATCTCTAGG ATGTTGGGAAGCCGAAAATGGCAATTTGCCGGATGCCTTTTACCACAAGTATCTTTCAGACTCTTCAAAAATTTACCCAGAACAATCCTTTAATATGTTA GTGGGTAACAGCCAGCTCAATCTCGCTAATAATGACGACATGGATGATATTGATGCTGCCACCAGTGATTCATCAGAACCTGATTTTCTATGGCAATTCA ATCAGTCCAAGTTTACCAGTATGACAAATGGGATTGAGTCAAAAACTAGCAAAGCAATTTCAAAAGCAGCAAAGAATCCAGAGTTAAGCAAGAACTTGAA TCCCTCGCTAGGCCCTTCACCATCACGAAAGTTAGCAAATGGAGGTGGAGTTCCCTTGCAACGGAACAGAAGGCATGCTGCTCCAGTTGACGGGAAACGC AAGATTGCAAATAGGAAGTAG
AA sequence Show only first row Show all	>Potri.014G125700.1 pacid=42762393 polypeptide=Potri.014G125700.1.p locus=Potri.014G125700 ID=Potri.014G125700.1.v4.1 annot-version=v4.1 MAGEGGTLSFSVASVVEDVLQQHGNRLGDLDLESRKAEEAASRRYEAAGWLRKMVGVVAAKDLPAEPSEEEFRLGLRSGIILCNALNKIQPGGVPKVVES PCDAAPIPDGAALSAFQYFENVRNFLVAVQEMGIPNFEASDLEQGGKSARVVNTVLALKSYSEWKQTGGNGIWKFGGNVKPPVSAKSFVRKNSEPFMNSL SRNLSINGKSFNSLSSDLEYSNKMSGSGSLSMLVRAVLLDKKPEEVPMLVESVLSKVVEEFESRIASQYDMAKEAPKEIAISQGNKFLLKSTGDNKRTED KNVRLIKKEECFHKNQIAEEELKNKTQKQQMIFDKQQRDIQELKNTLSTTKAGMQFMQMKFHEEFNSLGMHIHGLAHAASGYHKVLEENRKLYNQVQDLK GSIRVYCRVRPFLSGQSNDLSTVHSIEDGNITISTASKHGKGCKSFSFNKVFEPCATQAEVFSDMQPLIRSVLDGYNVCIFAYGQTGSGKTYTMTGPKDL SEKNKGVNYRALGDLFLLAEQRKDIFCYNVAVQMIEIYNEQVRDLLVTDGSNKRLEIRNSSQTGLNVPDANIIPVSSTHDVIDLMNLGHRNRAVGATALN DRSSRSHSCLTVHVQGRDLASGTILRGCMHLVDLAGSERVNKSEVTGDRLKEAQHINKSLSALGDVIASLAQKNQHVPYRNSKLTQLLQDSLGGQAKTLM FVHISPEPDALGETISTLKFAERVATVELGAAQVNKGSTDVKELKEQIANQKAALAKKERETEHRRKGSESSPSNSNHRLRDANDSNLFRQPMGDVGNIE VHKSTLRQKRQSFDLDEILANSPPWPPVISPSLNYAEDEKEMASGEWVDKVMVNKQDAVNMVEKSLGCWEAENGNLPDAFYHKYLSDSSKIYPEQSFNML VGNSQLNLANNDDMDDIDAATSDSSEPDFLWQFNQSKFTSMTNGIESKTSKAISKAAKNPELSKNLNPSLGPSPSRKLANGGGVPLQRNRRHAAPVDGKR KIANRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47500			P-loop nucleoside triphosphate...		Potri.014G125700 [exp]	0	1
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.011G068800 [exp]	1.00	0.9303
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.012G069900 [exp]	2.00	0.9224
AT2G37195			unknown protein		Potri.016G090000 [exp]	2.00	0.9142
AT1G33470			RNA-binding (RRM/RBD/RNP motif...		Potri.019G068400 [exp]	3.87	0.9046
AT3G11590			unknown protein		Potri.016G074300 [exp]	3.87	0.9199
AT5G09400		KUP7	K+ uptake permease 7, K+ uptak...		Potri.003G023900 [exp]	6.00	0.8879	Pt-KUP7.2
					Potri.001G022601 [exp]	8.48	0.8962
AT5G03110			unknown protein		Potri.016G086900 [exp]	9.16	0.8959
AT1G19870		IQD32	IQ-domain 32 (.1)		Potri.002G025200 [exp]	9.16	0.8860
AT3G05545			RING/U-box superfamily protein...		Potri.005G024700 [exp]	11.13	0.8704

Compare expression of checked genes

Potri.014G125700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.