Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RSH1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02260 1305 / 0 AT-RSH1, RSH1, ATRSH1 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) AT1G54130 219 / 9e-61 AT-RSH3, RSH3, ATRSH3 RELA/SPOT homolog 3 (.1) AT3G14050 218 / 4e-60 AT-RSH2, RSH2, ATRSH2 RELA-SPOT HOMOLOG 2, RELA/SPOT homolog 2 (.1) AT3G17470 142 / 3e-35 ATCRSH Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G168200 [exp] 226 / 5e-63 AT1G54130 953 / 0.0 RELA/SPOT homolog 3 (.1) Potri.003G066000 [exp] 221 / 4e-61 AT1G54130 901 / 0.0 RELA/SPOT homolog 3 (.1) Potri.013G089000 [exp] 179 / 3e-46 AT1G54130 164 / 8e-42 RELA/SPOT homolog 3 (.1) Potri.010G002400 [exp] 142 / 3e-35 AT3G17470 688 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Potri.001G432960 [exp] 92 / 1e-22 AT4G02260 84 / 9e-21 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Potri.001G435200 [exp] 86 / 3e-20 AT4G02260 78 / 1e-18 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Potri.001G434400 [exp] 86 / 3e-20 AT4G02260 77 / 3e-18 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003599 [exp] 711 / 0 AT4G02260 643 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Lus10008210 [exp] 627 / 0 AT4G02260 566 / 0.0 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Lus10003600 [exp] 566 / 0 AT4G02260 508 / 8e-174 RELA-SPOT HOMOLOG 1, RELA/SPOT homolog 1 (.1.2.3) Lus10022102 [exp] 220 / 3e-62 AT1G54130 801 / 0.0 RELA/SPOT homolog 3 (.1) Lus10037672 [exp] 223 / 7e-62 AT1G54130 891 / 0.0 RELA/SPOT homolog 3 (.1) Lus10015656 [exp] 221 / 5e-61 AT1G54130 895 / 0.0 RELA/SPOT homolog 3 (.1) Lus10001862 [exp] 215 / 1e-58 AT1G54130 867 / 0.0 RELA/SPOT homolog 3 (.1) Lus10002139 [exp] 140 / 6e-34 AT1G54130 167 / 7e-43 RELA/SPOT homolog 3 (.1) Lus10028191 [exp] 124 / 3e-29 AT3G17470 671 / 0.0 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1) Lus10042894 [exp] 78 / 2e-14 AT3G17470 350 / 6e-114 Ca2+-activated RelA/spot homolog, Ca2+-activated RelA/spot homolog (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0237 [poplar] [flax] HD_PDEase PF01966 [poplar] [flax] HD HD domain CL0072 [poplar] [flax] Ubiquitin PF02824 [poplar] [flax] TGS TGS domain CL0260 [poplar] [flax] NTP_transf PF04607 [poplar] [flax] RelA_SpoT Region found in RelA / SpoT proteins
Representative CDS sequence Show only first row Show all	>Potri.014G126700.1 pacid=42763616 polypeptide=Potri.014G126700.1.p locus=Potri.014G126700 ID=Potri.014G126700.1.v4.1 annot-version=v4.1 ATGGCCTCTGCTTCTTCGTTGTCAGTCCCAGTGGAATGCTTGAATATATGTAAGTTATTATCGAAGGGGGATGGAAGTGGGAGATATGAGTGTAGTGTGC TTTCTTGCGCGTGGAAAGCTCCTAGAGTTTTGACTGGGTTTCTGGCCAGCACTGCCCATCCTTCTCCGCAGTGTTCGTCATTCTTGTGTGGCCGAAATGG AAGAAGGAAGCAGTTTAAGTCTAGATGCAAAGCCTTTGATACCGGAGGTTGTTATTCCAGTGAAGATTCTGACTTTGCACTTCTTGGGAGATTTTTTAAA TCCAGATTGCATCATGTAGCTGGTAAAAAATGGCAATTGTCTTCTTCATCGTCCATTTCTGCAGATACCTTCAATGAAGTTTCTCCTGAGAGATTGTGGG AGGATCTTAAGCCTACTGTTTCATACCTTTCACCAAAAGAATTGGAATTGGTCCATAAAGCTCTTAAGCTGGCCTTCGAGGCTCATGACGGTCAGAAAAG ACGCAGTGGAGAGCCCTTCATTATTCATCCTGTTGAAGTTGCACGTATTCTAGGAGAACTTGAACTGGATTGGGAGTCAATTGCTGCTGGATTACTGCAT GATACTGTCGAGGATACGAATGTTGTTACTTTTGAAAGAATTGAGGAGGAATTTGGTCCTATTGTGCGCCACATTGTAGAAGGAGAAACTAAGGTATCCA AACTGGGAAAATTAAAGTGTAAGAACGAAAATGAATCGGTGCAAGATGTAAAAGCTGATGACCTGCGGCAGATGTTTTTGGCTATGACAGAGGAGGTCCG TGTTATCATTGTCAAATTAGCTGACAGATTGCATAATATGCGAACTCTTTCGCACATGCCATTGCATAAGCAGTCCAGCATTGCAATGGAAACACTTCAG GTCTTTGCTCCTCTTGCAAAATTGTTGGGAATGTATCAAATCAAGTCTGAGCTTGAAAATCTATCATTCATGTATACAAATGCTGAAGATTATGCTAAGG TCAAGAGGAGAGTTGCAGATCTGTATAAAGAACATGAGAAAGAACTGGAAGAGGCAAACAAAATTTTGAAGAAGAAGATAGAGGAAGATCAGTTCCTAGA CCTTTTGACAGTGAAAACTGATGTACGTGCTGTCTGCAAGGAGCCTTACAGTATTTATAGAGCTGTGCTTAAATCCAAAGGTTCGATCAATGAAGTTAAC CAGATTGCTCAGCTTCGAATTATCATCCAGCCAAAGCCATGCATTGGAGCCGGGCCTTTATGCAGTCCACAGCAGATATGCTATCATGTTCTCGGCTTAG TCCATGGAATCTGGACCCCCATTCCTCGAGCCATGAAGGACTATATTGCAACTCCAAAACCTAATGGTTATCAAAGTCTTCATACAACTGTAATTCCATT TCTGTATGAAAGCATGTTTAGACTGGAAGTTCAGATAAGAACTGAAGAGATGGATCTGATAGCTGAGAGAGGCATTGCTGCTCACTATAGCGGGAGAGTA TTTGTTACAGGTTTAGTTGGACATGCAATGCCTAACGGTAGAAGTACAAGAGGGAAGGCAGTCTGTCTTAACAATGCAAACATTGCACTCAGGATTGGCT GGCTCAATGCAATTAGAGAATGGCAAGAAGAGTTTGTTGGCAATATGAGCTCTAGGGAATTTGTAGAGACCATTACCAGAGATCTACTCGGTAGCTGTGT CTTTGTATTTACACCAAGGGGAGAGATAAAGAATCTGCCAAAAGGAGCAACTGCAATCGACTATGCTTATATGATACACACTGAAATTGGCAATAAGATG GTGGCTGCAAAGGTCAATGGTAATCTTGTCTCTCCAATGCATGTACTTGCTAATGCAGAAGTCGTGGAGATAATTACTTATAATGCACTCTCTAGCAAAT CAGCTTTTCAGAGGCATAAGCAATGGTTACAGCATGCAAAAACACGAAGTGCAAGGCACAAAATTATGAAATTCTTAAGGGAGCAAGCTGCACTATCTGC TGCTGAAATAACAGCAGATTCGGTAAATGACTTTATTGCTGATTCTGAAGGGGAGAGTGAGGTAGAATATATCTCAGATAATAACAAACGGAGCAGACCT CTGTGGGAGAAAATACTTATGAATGTTGTGGAAAAGTCATCCCAAGGGAAATGTTCAAATGATTTTTTGCCCGTGAACTATGGAACTGTGTGGACCCCCA AGGTCAATGGGAAACATAATAAGCATGTGCAGACCAAGGGGGATTTATTATCTCAGGGAAATGGTGTTGCCAAGATGATACAAGCTAGCATTCCAAGGTA CAAGGAAGTCTTGCCTGGTTTAGAAAGTTGGCAAGCCAGCAAGGTTGCCTCTTGGCACAGTCTTGAAGGGCACTCCATCCAATGGTTTTGTGTTGTATGC ATTGATCGAAGAGGCATGATGGCTGAGATTGCAACAGCTTTGGCAGCTGTAGATATCAATATATGTTCTTGTGTGTCAGAGACTGATAGAGGAAGGGGAA TGGCTGTGATGCTGTTTCATATTGAAGGCAACCTTGATAGTTTGGTTAAGGGTTGCTCAAGTGTGGATCTAATTCAGGGTGTTTTAGGATGGTCTACGGG ATGCAGCTGGCCAAGCTCAACAGAAAACCATCTTCTTGAATGCTAA
AA sequence Show only first row Show all	>Potri.014G126700.1 pacid=42763616 polypeptide=Potri.014G126700.1.p locus=Potri.014G126700 ID=Potri.014G126700.1.v4.1 annot-version=v4.1 MASASSLSVPVECLNICKLLSKGDGSGRYECSVLSCAWKAPRVLTGFLASTAHPSPQCSSFLCGRNGRRKQFKSRCKAFDTGGCYSSEDSDFALLGRFFK SRLHHVAGKKWQLSSSSSISADTFNEVSPERLWEDLKPTVSYLSPKELELVHKALKLAFEAHDGQKRRSGEPFIIHPVEVARILGELELDWESIAAGLLH DTVEDTNVVTFERIEEEFGPIVRHIVEGETKVSKLGKLKCKNENESVQDVKADDLRQMFLAMTEEVRVIIVKLADRLHNMRTLSHMPLHKQSSIAMETLQ VFAPLAKLLGMYQIKSELENLSFMYTNAEDYAKVKRRVADLYKEHEKELEEANKILKKKIEEDQFLDLLTVKTDVRAVCKEPYSIYRAVLKSKGSINEVN QIAQLRIIIQPKPCIGAGPLCSPQQICYHVLGLVHGIWTPIPRAMKDYIATPKPNGYQSLHTTVIPFLYESMFRLEVQIRTEEMDLIAERGIAAHYSGRV FVTGLVGHAMPNGRSTRGKAVCLNNANIALRIGWLNAIREWQEEFVGNMSSREFVETITRDLLGSCVFVFTPRGEIKNLPKGATAIDYAYMIHTEIGNKM VAAKVNGNLVSPMHVLANAEVVEIITYNALSSKSAFQRHKQWLQHAKTRSARHKIMKFLREQAALSAAEITADSVNDFIADSEGESEVEYISDNNKRSRP LWEKILMNVVEKSSQGKCSNDFLPVNYGTVWTPKVNGKHNKHVQTKGDLLSQGNGVAKMIQASIPRYKEVLPGLESWQASKVASWHSLEGHSIQWFCVVC IDRRGMMAEIATALAAVDINICSCVSETDRGRGMAVMLFHIEGNLDSLVKGCSSVDLIQGVLGWSTGCSWPSSTENHLLEC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02260		AT-RSH1, RSH1, ...	RELA-SPOT HOMOLOG 1, RELA/SPOT...		Potri.014G126700 [exp]	0	1	RSH1.2
AT4G01800		AtcpSecA, AGY1,...	Arabidopsis thaliana chloropla...		Potri.014G112266 [exp]	1.41	0.9808
AT5G53170		FTSH11	FTSH protease 11 (.1)		Potri.012G000700 [exp]	1.73	0.9789
AT1G32200		ACT1, ATS1	ACYLTRANSFERASE 1, phospholipi...		Potri.001G136600 [exp]	3.60	0.9540
AT2G39970		PXN, PMP38, APE...	peroxisomal NAD carrier, perox...		Potri.002G000200 [exp]	4.89	0.9626
AT5G42390		SPP	stromal processing peptidase, ...		Potri.002G235700 [exp]	5.19	0.9602
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Potri.011G140100 [exp]	5.65	0.9706
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Potri.015G037800 [exp]	7.00	0.9621	PtrcGR1,Pt-GR.3
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Potri.001G436300 [exp]	8.36	0.9581
AT5G44000			Glutathione S-transferase fami...		Potri.014G192300 [exp]	8.66	0.9530
AT1G12800			Nucleic acid-binding, OB-fold-...		Potri.003G124200 [exp]	8.94	0.9612

Compare expression of checked genes

Potri.014G126700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.