Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02810 712 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 696 / 0 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G47550 684 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G04970 473 / 5e-161 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G10720 473 / 5e-161 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) AT2G26440 384 / 2e-127 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 372 / 3e-123 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G11580 365 / 4e-120 ATPMEPCRA methylesterase PCR A (.1) AT3G43270 364 / 6e-120 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G60730 361 / 8e-119 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G202600 [exp] 944 / 0 AT1G02810 749 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.005G022800 [exp] 623 / 0 AT4G02330 571 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G247700 [exp] 501 / 6e-173 AT3G10720 746 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.008G011100 [exp] 499 / 6e-172 AT3G10720 744 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Potri.002G202500 [exp] 415 / 3e-139 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 400 / 3e-134 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 400 / 4e-134 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.010G109400 [exp] 392 / 1e-130 AT1G23200 579 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 389 / 1e-129 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010309 [exp] 608 / 0 AT1G02810 575 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013416 [exp] 560 / 0 AT1G02810 519 / 2e-180 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015210 [exp] 550 / 0 AT4G02330 556 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031470 [exp] 550 / 0 AT4G02330 573 / 0.0 pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029866 [exp] 503 / 3e-167 AT1G02810 511 / 6e-170 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10028882 [exp] 471 / 8e-161 AT5G04970 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008937 [exp] 454 / 6e-154 AT3G10720 704 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1.2) Lus10008203 [exp] 401 / 5e-134 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 390 / 4e-130 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 381 / 2e-127 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.014G127000.1 pacid=42764707 polypeptide=Potri.014G127000.1.p locus=Potri.014G127000 ID=Potri.014G127000.1.v4.1 annot-version=v4.1 ATGATGCCTTCTAAGCTCATCTCTCTGGTAGCGTTGGCTGTTGTTTTTCTTCCCTTCCTTGCCTCTCCATCTTTAGCAGATGTACCAAGTAGTGATCCTG TCAGCCCTGGAACCCTTTGCAAGGACACCCCAGACCCTTCCTTTTGCAAATCTGTTCTCCCTGTCCAATCTACCAATGTCTATGACTCTGCCCGACTTTG CGTCCGAAAGTCCCTATCACAATCCCGTAAATTTTTGAACCTAGTTAATGGATATCTCTCACGCCGCTCCACTTTGTCCGTCGCTGCAATTCGGGCTCTT GAGGATTGTCAGTTTCTAGCTAATCTAAACATGGAGTTTTTGTTGAGCTCCTTTCAAACTGTCAATGCTACTAGTAAAACCTTGCCTTCTTTGCAAGCTG ATAATGTGCAAACTTTGCTAAGTGCCATTTTAACGAACCAGCAAACCTGTTTAGATGGCCTACAGGCCACATCTTCTGCTTCGAGTGTAAGTAACGATCT CTCAGTCCCTTTGTCTAATGACACAAAACTTTATAGTGTTTCTCTAGCTTTTTTCACCGAAGGTTGGGTTCCTAAAAAGAAGAGAGGGAGCACATGGCAG CCTAAAAGCAAGCAGTTTGCATTCAGACATGGACGATTGCCAATGAAAATGTCTGCCAGGACCCGTGCAATTTACGAGTCAGTGAGCACAAGAAAACTTC TCCAGACAGTGAATAACGATATAGAGGTCAGTGATATAGTGACGGTGAGTCAGGACGGACAAGGAAATTTCACAACCATCAATGATGCTGTCGCTGCAGC TCCAAATAATACCGACGGCAGTAATGGCTACTTCATGATTTATGTCACTGCAGGCATTTATGAAGAGTATGTGTCTATTGCAAAGAACAAGAAATATTTG ATGATGGTTGGAGATGGTATAAATCAAACGGTGATTACTGGGAATCGTAGTGTTGTTGATGGGTGGACTACTTTCAATTCTGCTACATTTGCTGTGGTGG CACCCAACTTTGTTGCAGTGAACATCACATTCCGTAACACAGCTGGGGCAGTCAAGCATCAGGCTGTAGCTGTTCGAAGTGGAGCTGATTTGTCTGCATT TTATGGTTGCAGTTTTGAAGGGTACCAGGATACCTTATACACCCATTCTCTGAGACAATTCTACAGGGAGTGTGATATCTATGGTACTGTTGATTTTATA TTTGGCAATGCTGCTGTTGTTTTACAAAACTGTAACTTGTATCCACGGCTGCCTATGAGTGGTCAATTCAATGCCATCACTGCCCAAGGTAGAACAGATC CGAACCAAAATACTGGCACATCTATACATAATTGTAATATTAAAGCTGCTGACGATTTGGCTTCAAGCAATGCAACGGTACAAACATATCTTGGGAGGCC ATGGAAGCAGTATTCAAGAACTGTTTATATGCAAAGTTTCATGGATGGACTGATAAATCCTGCTGGTTGGCAAATATGGAGTGGAGATTTCGCACTAAAC ACATCATATTATGCAGAATACAACAACACCGGACCGGGTTCTGCCACTACAAACAGGGTAACATGGCCTGGTTTCCACGTTATTAACGCTACTGATGCTG TTAATTTCACCGTGTCTAGCTTCTTGCTGGGGAATGATTGGCTACCTCAAACAGCCGTTCCCTTCTCTAGTGGCCTGATATGA
AA sequence Show only first row Show all	>Potri.014G127000.1 pacid=42764707 polypeptide=Potri.014G127000.1.p locus=Potri.014G127000 ID=Potri.014G127000.1.v4.1 annot-version=v4.1 MMPSKLISLVALAVVFLPFLASPSLADVPSSDPVSPGTLCKDTPDPSFCKSVLPVQSTNVYDSARLCVRKSLSQSRKFLNLVNGYLSRRSTLSVAAIRAL EDCQFLANLNMEFLLSSFQTVNATSKTLPSLQADNVQTLLSAILTNQQTCLDGLQATSSASSVSNDLSVPLSNDTKLYSVSLAFFTEGWVPKKKRGSTWQ PKSKQFAFRHGRLPMKMSARTRAIYESVSTRKLLQTVNNDIEVSDIVTVSQDGQGNFTTINDAVAAAPNNTDGSNGYFMIYVTAGIYEEYVSIAKNKKYL MMVGDGINQTVITGNRSVVDGWTTFNSATFAVVAPNFVAVNITFRNTAGAVKHQAVAVRSGADLSAFYGCSFEGYQDTLYTHSLRQFYRECDIYGTVDFI FGNAAVVLQNCNLYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCNIKAADDLASSNATVQTYLGRPWKQYSRTVYMQSFMDGLINPAGWQIWSGDFALN TSYYAEYNNTGPGSATTNRVTWPGFHVINATDAVNFTVSSFLLGNDWLPQTAVPFSSGLI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02810			Plant invertase/pectin methyle...		Potri.014G127000 [exp]	0	1
AT1G02640		ATBXL2, BXL2	beta-xylosidase 2 (.1)		Potri.002G197200 [exp]	3.00	0.9206
AT3G03280			unknown protein		Potri.004G094000 [exp]	8.77	0.8968
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.012G127900 [exp]	9.48	0.8974	Pt-FLA14.6
AT4G23690			Disease resistance-responsive ...		Potri.001G097001 [exp]	9.64	0.9145
AT5G13430			Ubiquinol-cytochrome C reducta...		Potri.003G162200 [exp]	11.61	0.9073
AT4G29870			Oligosaccharyltransferase comp...		Potri.018G139600 [exp]	17.02	0.8751
AT1G77690		LAX3	like AUX1 3 (.1)		Potri.002G087000 [exp]	17.32	0.9017	PtrAUX8
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Potri.010G071000 [exp]	17.54	0.9098
AT5G65020		ANNAT2	annexin 2 (.1.2)		Potri.005G075900 [exp]	19.39	0.8982	ANN1.3
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.017G092400 [exp]	24.73	0.8878

Compare expression of checked genes

Potri.014G127000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.