Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02350 1188 / 0 SEC15B exocyst complex component sec15B (.1) AT3G56640 781 / 0 SEC15A exocyst complex component sec15A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G203200 [exp] 1472 / 0 AT4G02350 1186 / 0.0 exocyst complex component sec15B (.1) Potri.016G032100 [exp] 795 / 0 AT3G56640 1265 / 0.0 exocyst complex component sec15A (.1) Potri.006G034200 [exp] 780 / 0 AT3G56640 1268 / 0.0 exocyst complex component sec15A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010439 [exp] 768 / 0 AT3G56640 1202 / 0.0 exocyst complex component sec15A (.1) Lus10009856 [exp] 766 / 0 AT4G02350 689 / 0.0 exocyst complex component sec15B (.1) Lus10027288 [exp] 759 / 0 AT3G56640 1197 / 0.0 exocyst complex component sec15A (.1) Lus10038993 [exp] 757 / 0 AT3G56640 1216 / 0.0 exocyst complex component sec15A (.1) Lus10010296 [exp] 622 / 0 AT4G02350 556 / 0.0 exocyst complex component sec15B (.1) Lus10010295 [exp] 566 / 0 AT4G02350 517 / 5e-179 exocyst complex component sec15B (.1) Lus10009857 [exp] 141 / 3e-39 AT4G02350 119 / 9e-33 exocyst complex component sec15B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF04091 [poplar] [flax] Sec15 Exocyst complex subunit Sec15-like
Representative CDS sequence Show only first row Show all	>Potri.014G127400.1 pacid=42763990 polypeptide=Potri.014G127400.1.p locus=Potri.014G127400 ID=Potri.014G127400.1.v4.1 annot-version=v4.1 ATGCTCCCCTCAAAGGCTCGCCGTAAAGTAGCTCCGGCGAACGGAGACGCTGACAACTCCGCCGACAAACAAGACCAGCTCCTCCTATCCTCCGCCGTAT GCAATGGCGAGGACCTCGGACCTTTCGTCCGCAAAGCCTTCGCATCTGGCAAGCCGGAGACACTCCTTCACAATCTCCGCCACTTCGCTCGCTCCAAAGA ATCTGAAATCGAAGAAGTCTGCAAAGCTCACTATCAAGACTTCATCTTGGCCGTTGATGACCTCCGATCTCTCCTCTCCGACGTCGATTCACTCAAATCT GCACTCTCCGATTCCAACTCCAAGCTCCAGTCCGTCGCTAGGCCCCTCTTAACCTCCCTTGATTCCTACCTCGAAGCTCAAACTGGATCGAATAATGTGA ACTTAGCTCTCAGTTTGATTTTCTCTTGTATCAAGCTACTAGAGCTTTGTTCTAGATGTAATTTCCATTTATCTGGCGGTAATTTTTACATGGCGTTGAA GTGTGTGGATTCGATTGAGACTGATTTCTTAGATAAAACGCCGTCGTCTACTTTGAAGAGAATGCTAGAGAAGAAGATCCCGGAGATTAGATCGCATATA GAGAGGAAGGTTAGTAAAGAGTTTGGTGATTGGTTAGTGGATATTCGTGTCGCCTGTCGGAATTTGGGGCAATTGGCTATTGGTCAAGCCTCGGCGGCGA GGCAGAGAGAAGAGGATTTGAGGATTAAGCAGAGGCAAGCTGAAGAACAGAGTAGACTTAGTTTGAGAGATTGTGTTTATGCTTTGCAAGAGGAGGAGGA GGACGATGGGCTTAGTGGTGTGATCGGTGATGATGGTAATAGTAATGGTGGCGGTAATGGGTTGTTGGGGTTCGATTTGACTCCACTTTATAGGGCTTAT CATATACATCAGACGTTAGGACTTGAAGATCGGTTTAAGCAGTATTATTTTGAGAATAGGAAGCTTCAATTGACTTCGGATTTTCAGGTATCTTCGATGA CTCCATTTCTTGAATCACATCAGACTTTTTTCGCACAAATTGCCGGGTTTTTTATTGTGGAAGATCAGATTTTGAGGACTGGAGGGCGTTTGATTTCGAG AATGGAAGTTGAGAATTTGTGGGAAACCGCTGTTAGTAAGATGTGTTCAGTATTAGAGGATCAGTTTTCTAGAATGCAAACTGCGAATCATCTTTTATTG ATTAAGGATTATGTGAGTTTGCTTGGAGTAACTTTGCGTAGATATGGGTACCCTGTTGATTCTTTGTTAGATGTTTTGAGCAAGCACAGGGATAAATACC ATGAGCTATTGTTGTCTGATTGTCGTAGGCAGATTGCTGAAGCGCTTTCTGCAGATAAGTTTGAGCAGATGTTGATGAAGAAAGAGTATGAATATTCTAT GAATGTGCTTTCATTTCAATTACAGACATCAGACATTGTACCGGCGTTTCCTTACGTTGCACCTTTTTCATCCACCGTGCCTGATTGTTGCCGAATTGTG CGGTCCTTTATTGAAGATTCTGTGAGTTTTATGTCGTATGGTGGGCAGCTTGAATTCTTTGATGTTATAAAGAAATATTTGGACCGGCTTTTGAGCGAGG TTTTGGATGAAGCTTTATTGAAGCTTATTAACACATCAGTTCACGGGGTATCCCAGGCTATGCAGGTTGCAGCAAACATGGCCGTGTTAGAACGTGCTTG TGATTTCTTCTTCCGTCATTCTGCGCAGCTTTCAGGCATTCCCTTGAGAATGGCAGAGAGGGGTAGGCGACGGTTTCCTCTCAACAATGCTCGTGATGCA GCTGAAGAGATGCTATCCGGGCTGCTGAAACAGAAGGTTGATGGTTTTATGATGTTGATAGAGAATGTGAACTGGATGGCTGATGAGCCCACGCAGGGCG GCAATGAATACGTGAATGAAGTCATGATATATTTGGAAACTTTGGTTTCTACTGCTCAACAGATATTGCCAACTCCTGTTCTGAAAAGGGTTTTGCAAGA GGTTCTTTCTCACATTTCAGAGATGGTTGTTGGGGCTTTACTTGGGGACTCAGTTAAGAGGTTTAATGTTAATGCTATCATGGGGATTGACGTGGATATT CGATTGTTGGAGTCTTTTGCTGATAACCAAGCTTCATTGTTCTCTGAAGGGGATGCAAATCAGTTGAAAACAGCACTTGCTGAGGCAAGGCAACTGGTTA ATTTGCTTTTGAGCAATCATCCTGAGAATTTTCTGAATCCTGTGATCAGGGAGAGGAGTTATAATATGTTGGACCATAGGAAAGTAATGACAATATCAGA GAAGTTGAGGGATCCTTCAGATCGGCTATTTGGAACATTTGGGAGCAGGGGAGCCAGGCAGAATCCAAAAAAGAAGTCTCTGGATGCTTTGATAAAAAAA CTCAGGGACGTTAGTTGA
AA sequence Show only first row Show all	>Potri.014G127400.1 pacid=42763990 polypeptide=Potri.014G127400.1.p locus=Potri.014G127400 ID=Potri.014G127400.1.v4.1 annot-version=v4.1 MLPSKARRKVAPANGDADNSADKQDQLLLSSAVCNGEDLGPFVRKAFASGKPETLLHNLRHFARSKESEIEEVCKAHYQDFILAVDDLRSLLSDVDSLKS ALSDSNSKLQSVARPLLTSLDSYLEAQTGSNNVNLALSLIFSCIKLLELCSRCNFHLSGGNFYMALKCVDSIETDFLDKTPSSTLKRMLEKKIPEIRSHI ERKVSKEFGDWLVDIRVACRNLGQLAIGQASAARQREEDLRIKQRQAEEQSRLSLRDCVYALQEEEEDDGLSGVIGDDGNSNGGGNGLLGFDLTPLYRAY HIHQTLGLEDRFKQYYFENRKLQLTSDFQVSSMTPFLESHQTFFAQIAGFFIVEDQILRTGGRLISRMEVENLWETAVSKMCSVLEDQFSRMQTANHLLL IKDYVSLLGVTLRRYGYPVDSLLDVLSKHRDKYHELLLSDCRRQIAEALSADKFEQMLMKKEYEYSMNVLSFQLQTSDIVPAFPYVAPFSSTVPDCCRIV RSFIEDSVSFMSYGGQLEFFDVIKKYLDRLLSEVLDEALLKLINTSVHGVSQAMQVAANMAVLERACDFFFRHSAQLSGIPLRMAERGRRRFPLNNARDA AEEMLSGLLKQKVDGFMMLIENVNWMADEPTQGGNEYVNEVMIYLETLVSTAQQILPTPVLKRVLQEVLSHISEMVVGALLGDSVKRFNVNAIMGIDVDI RLLESFADNQASLFSEGDANQLKTALAEARQLVNLLLSNHPENFLNPVIRERSYNMLDHRKVMTISEKLRDPSDRLFGTFGSRGARQNPKKKSLDALIKK LRDVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02350		SEC15B	exocyst complex component sec1...		Potri.014G127400 [exp]	0	1
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Potri.015G060800 [exp]	1.41	0.6732
AT2G17200		DSK2	ubiquitin family protein (.1)		Potri.009G166000 [exp]	3.00	0.6666
AT5G15470		GAUT14	galacturonosyltransferase 14 (...		Potri.017G090800 [exp]	7.93	0.6408
AT4G39220		ATRER1A	Rer1 family protein (.1)		Potri.007G047800 [exp]	10.19	0.6558
AT3G16270			ENTH/VHS family protein (.1)		Potri.001G187000 [exp]	11.31	0.6299
AT5G22070			Core-2/I-branching beta-1,6-N-...		Potri.001G215400 [exp]	11.74	0.6428
AT2G39720		RHC2A	RING-H2 finger C2A (.1)		Potri.010G201300 [exp]	12.44	0.6493
AT5G67020			unknown protein		Potri.005G138300 [exp]	12.96	0.5803
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Potri.010G093200 [exp]	21.21	0.5409	CUL3.2
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Potri.008G030700 [exp]	24.65	0.5704

Compare expression of checked genes

Potri.014G127400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.