Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02370 168 / 9e-54 Protein of unknown function, DUF538 (.1) AT1G02816 167 / 2e-53 Protein of unknown function, DUF538 (.1) AT4G02360 144 / 1e-44 Protein of unknown function, DUF538 (.1) AT1G02813 132 / 5e-40 Protein of unknown function, DUF538 (.1) AT5G19860 78 / 2e-18 Protein of unknown function, DUF538 (.1) AT3G07470 76 / 1e-17 Protein of unknown function, DUF538 (.1) AT5G19590 75 / 2e-17 Protein of unknown function, DUF538 (.1) AT5G01610 73 / 1e-16 Protein of unknown function, DUF538 (.1) AT1G55265 71 / 7e-16 Protein of unknown function, DUF538 (.1) AT5G37070 71 / 2e-15 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G127600 [exp] 173 / 6e-55 AT1G02816 206 / 4e-68 Protein of unknown function, DUF538 (.1) Potri.002G203400 [exp] 168 / 8e-54 AT1G02816 211 / 6e-71 Protein of unknown function, DUF538 (.1) Potri.005G024000 [exp] 160 / 3e-50 AT1G02816 186 / 1e-60 Protein of unknown function, DUF538 (.1) Potri.013G014600 [exp] 152 / 2e-47 AT1G02816 181 / 8e-59 Protein of unknown function, DUF538 (.1) Potri.006G158952 [exp] 91 / 1e-23 AT5G19590 201 / 3e-67 Protein of unknown function, DUF538 (.1) Potri.002G238900 [exp] 75 / 4e-17 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 74 / 5e-17 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 74 / 7e-17 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.003G217300 [exp] 73 / 1e-16 AT1G55265 139 / 2e-42 Protein of unknown function, DUF538 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009854 [exp] 160 / 1e-50 AT1G02816 184 / 3e-60 Protein of unknown function, DUF538 (.1) Lus10010297 [exp] 160 / 1e-50 AT1G02816 184 / 4e-60 Protein of unknown function, DUF538 (.1) Lus10009855 [exp] 159 / 2e-50 AT1G02816 169 / 2e-54 Protein of unknown function, DUF538 (.1) Lus10033088 [exp] 93 / 3e-24 AT5G19590 189 / 2e-62 Protein of unknown function, DUF538 (.1) Lus10017733 [exp] 92 / 7e-24 AT5G19590 189 / 8e-63 Protein of unknown function, DUF538 (.1) Lus10025861 [exp] 84 / 6e-20 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10038238 [exp] 79 / 2e-18 AT3G07460 162 / 4e-51 Protein of unknown function, DUF538 (.1.2) Lus10026841 [exp] 76 / 5e-17 AT5G16380 156 / 6e-48 Protein of unknown function, DUF538 (.1) Lus10020218 [exp] 74 / 7e-17 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1) Lus10019216 [exp] 73 / 4e-16 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [poplar] [flax] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Potri.014G127500.1 pacid=42762765 polypeptide=Potri.014G127500.1.p locus=Potri.014G127500 ID=Potri.014G127500.1.v4.1 annot-version=v4.1 ATGGGTTCGCCTTTCCGCTCAAGATCCATCTCTCCCATGGCTTCCCTCTGGCCAACTTTCTTGGTTCTAGCTCTCTCAGCATCTTCACTCGTCAATGCAG ACGACACATCAACAGTATACGAAGTTCTCCAGGAATACGACTTTCCTATCGGTCTCCTTCCCGCAGGAGTAACGAGCTACGAATTTGACAACTCAACAGG TAAGTTCACAGTCCATCTTAATGGCACTTGCTCATTCAAAATCGATTCATATGAGCTCAAGTACAAGTCCACTGTTAAGGGTGTGATAGCCAAAGACAAG CTCTCAAAATTAAGTGGGATTCAAGTGAAGGTGCTCTTCCTGTGGCTTAGCATTGTTGAAGTGACTCGTGATGAAGATGAACTAGAATTTTCTGTGGGGA TTGCTTCTGCTAATTTTCCTGTGAGTAATTTTGTTGAGTGCCCCATTTGTGGATGTGGCTTTGATTGTAAAGATGTCGACTTGAGGAAAGGCAGGCTCAG TCGTCGATTCTCTTCTTCTTAG
AA sequence Show only first row Show all	>Potri.014G127500.1 pacid=42762765 polypeptide=Potri.014G127500.1.p locus=Potri.014G127500 ID=Potri.014G127500.1.v4.1 annot-version=v4.1 MGSPFRSRSISPMASLWPTFLVLALSASSLVNADDTSTVYEVLQEYDFPIGLLPAGVTSYEFDNSTGKFTVHLNGTCSFKIDSYELKYKSTVKGVIAKDK LSKLSGIQVKVLFLWLSIVEVTRDEDELEFSVGIASANFPVSNFVECPICGCGFDCKDVDLRKGRLSRRFSSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02370			Protein of unknown function, D...		Potri.014G127500 [exp]	0	1
AT4G24204			RING/U-box superfamily protein...		Potri.007G050500 [exp]	1.00	0.9260
AT5G50610			unknown protein		Potri.001G059800 [exp]	3.31	0.8433
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.008G021000 [exp]	3.46	0.8693
AT3G54960		ATPDI1, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.010G222100 [exp]	8.12	0.8775
AT2G47115			unknown protein		Potri.014G115200 [exp]	8.12	0.8628
AT2G22250		ATAAT, AAT, MEE...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.007G088426 [exp]	10.24	0.8105
AT5G38530		TSBtype2	tryptophan synthase beta type ...		Potri.017G109600 [exp]	10.58	0.8396
AT3G22060			Receptor-like protein kinase-r...		Potri.017G040300 [exp]	12.64	0.8440
AT1G34580			Major facilitator superfamily ...		Potri.002G095900 [exp]	13.60	0.8687	HT1.1
AT5G28840		GME	"GDP-D-mannose 3',5'-epimerase...		Potri.013G040600 [exp]	16.61	0.8189

Compare expression of checked genes

Potri.014G127500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.