Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02816 206 / 5e-68 Protein of unknown function, DUF538 (.1) AT4G02370 194 / 4e-63 Protein of unknown function, DUF538 (.1) AT4G02360 158 / 3e-49 Protein of unknown function, DUF538 (.1) AT1G02813 130 / 3e-38 Protein of unknown function, DUF538 (.1) AT5G19590 73 / 3e-16 Protein of unknown function, DUF538 (.1) AT5G19860 69 / 2e-14 Protein of unknown function, DUF538 (.1) AT5G16380 69 / 3e-14 Protein of unknown function, DUF538 (.1) AT3G07460 67 / 1e-13 Protein of unknown function, DUF538 (.1.2) AT3G07470 66 / 2e-13 Protein of unknown function, DUF538 (.1) AT1G55265 55 / 2e-09 Protein of unknown function, DUF538 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G203400 [exp] 256 / 9e-88 AT1G02816 211 / 6e-71 Protein of unknown function, DUF538 (.1) Potri.005G024000 [exp] 215 / 5e-71 AT1G02816 186 / 1e-60 Protein of unknown function, DUF538 (.1) Potri.013G014600 [exp] 201 / 6e-66 AT1G02816 181 / 8e-59 Protein of unknown function, DUF538 (.1) Potri.014G127500 [exp] 178 / 5e-57 AT4G02370 167 / 1e-53 Protein of unknown function, DUF538 (.1) Potri.006G158952 [exp] 86 / 3e-21 AT5G19590 201 / 3e-67 Protein of unknown function, DUF538 (.1) Potri.002G238900 [exp] 72 / 2e-15 AT3G07470 193 / 1e-63 Protein of unknown function, DUF538 (.1) Potri.014G177800 [exp] 64 / 2e-12 AT3G07470 192 / 3e-63 Protein of unknown function, DUF538 (.1) Potri.003G217200 [exp] 64 / 2e-12 AT5G19860 196 / 1e-64 Protein of unknown function, DUF538 (.1) Potri.001G008240 [exp] 55 / 2e-09 AT1G55265 137 / 8e-42 Protein of unknown function, DUF538 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010297 [exp] 203 / 6e-67 AT1G02816 184 / 4e-60 Protein of unknown function, DUF538 (.1) Lus10009854 [exp] 203 / 9e-67 AT1G02816 184 / 3e-60 Protein of unknown function, DUF538 (.1) Lus10009855 [exp] 156 / 2e-48 AT1G02816 169 / 2e-54 Protein of unknown function, DUF538 (.1) Lus10017733 [exp] 90 / 1e-22 AT5G19590 189 / 8e-63 Protein of unknown function, DUF538 (.1) Lus10033088 [exp] 84 / 2e-20 AT5G19590 189 / 2e-62 Protein of unknown function, DUF538 (.1) Lus10038238 [exp] 72 / 2e-15 AT3G07460 162 / 4e-51 Protein of unknown function, DUF538 (.1.2) Lus10025861 [exp] 72 / 6e-15 AT3G07470 171 / 4e-54 Protein of unknown function, DUF538 (.1) Lus10019216 [exp] 67 / 1e-13 AT3G07470 185 / 5e-60 Protein of unknown function, DUF538 (.1) Lus10026841 [exp] 67 / 1e-13 AT5G16380 156 / 6e-48 Protein of unknown function, DUF538 (.1) Lus10020218 [exp] 66 / 2e-13 AT5G16380 157 / 3e-49 Protein of unknown function, DUF538 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04398 [poplar] [flax] DUF538 Protein of unknown function, DUF538
Representative CDS sequence Show only first row Show all	>Potri.014G127600.2 pacid=42762290 polypeptide=Potri.014G127600.2.p locus=Potri.014G127600 ID=Potri.014G127600.2.v4.1 annot-version=v4.1 ATGGTGACAAAATCAGCACTCACCAACTACTTTTCCAAAAGTCATTACGTGTCCTACCGAGTTCCAACGACTTCCCAAGCAGAAATCAACAAAATTTACC TCAATCCAGTAAACAAAAATAAAAAACGAATCCTTTTCACACCAAGCAGAGCGACCCCAATGTCTTTCACCGCCATTTTCACCCTCTTCCTCATCCTATC ACCGCTCGTCACTTCATCATCTCTCACCATCACCGACAATCTGCCAACGGTGTATGAAATCATAGCTGGATACAACTTCCCGATCGGTATTCTCCCAAAA GGTGCCACAGGCTACAAACTGGACAAAACTACTGGCGAATTCGGCGCCTTTTTGAACGGTTCGTGCAGTTTCTCTGTGGAAGGTTCTTATCAGCTTAACT ACAAATCCACAATCAGTGGTTACATAAGCGACAACAGGCTAAAGAGTTTGAGTGGAGTAAGTGTGAAGGTTCTGTTTTTTTGGTTAAATATTGTGGAGGT TATTAGAAATGGAGATGAGCTCGATTTTTCTGTTGGAATCGCTTCCGCCAGTTTTCCAATCGATAATTTCTATGAGTGTCCACAGTGTGGGTGTGGGTTG AATTGCAATAATGTTGAGTTAGCAACCAAGCTTAGATCAAACCCCTTTGTTTCCTCTTTTTAG
AA sequence Show only first row Show all	>Potri.014G127600.2 pacid=42762290 polypeptide=Potri.014G127600.2.p locus=Potri.014G127600 ID=Potri.014G127600.2.v4.1 annot-version=v4.1 MVTKSALTNYFSKSHYVSYRVPTTSQAEINKIYLNPVNKNKKRILFTPSRATPMSFTAIFTLFLILSPLVTSSSLTITDNLPTVYEIIAGYNFPIGILPK GATGYKLDKTTGEFGAFLNGSCSFSVEGSYQLNYKSTISGYISDNRLKSLSGVSVKVLFFWLNIVEVIRNGDELDFSVGIASASFPIDNFYECPQCGCGL NCNNVELATKLRSNPFVSSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02816			Protein of unknown function, D...		Potri.014G127600 [exp]	0	1
AT1G20225			Thioredoxin superfamily protei...		Potri.005G244400 [exp]	3.00	0.6485
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.015G031800 [exp]	6.16	0.6463	Pt-NANN.2
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.006G207400 [exp]	12.48	0.6124	ILL1,Pt-ILR1.2
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.004G160300 [exp]	13.78	0.6081	RD19.3
AT3G16990			Haem oxygenase-like, multi-hel...		Potri.008G106600 [exp]	24.00	0.5795	Pt-PM36.1
AT1G55265			Protein of unknown function, D...		Potri.001G008240 [exp]	26.32	0.5645
AT3G02360			6-phosphogluconate dehydrogena...		Potri.008G113700 [exp]	26.45	0.5224	GND.1
AT2G33390			unknown protein		Potri.008G170700 [exp]	38.97	0.5229
AT5G16200			50S ribosomal protein-related ...		Potri.017G117866 [exp]	50.84	0.5850
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Potri.003G131800 [exp]	58.48	0.5342	MMK3.1

Compare expression of checked genes

Potri.014G127600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.