Plant FIBer expression Database

Potri.014G128000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02390 587 / 0 ATPARP1, APP POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
AT2G31320 279 / 5e-82 ATPARP2 poly(ADP-ribose) polymerase 2 (.1)
AT5G22470 92 / 4e-19 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.014G128200
[exp]
637 / 0 AT4G02390 827 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
Potri.002G041300
[exp]
268 / 6e-78 AT2G31320 1382 / 0.0 poly(ADP-ribose) polymerase 2 (.1)
Potri.009G143900
[exp]
107 / 9e-24 AT5G22470 1120 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1)
Potri.009G136501
[exp]
62 / 4e-11 AT4G02390 74 / 5e-16 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
Potri.004G184100
[exp]
51 / 1e-06 AT5G22470 539 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007882
[exp]
607 / 0 AT4G02390 758 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
Lus10030363
[exp]
472 / 8e-160 AT4G02390 571 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
Lus10033871
[exp]
267 / 2e-77 AT2G31320 1372 / 0.0 poly(ADP-ribose) polymerase 2 (.1)
Lus10019539
[exp]
117 / 3e-27 AT5G22470 957 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1)
Lus10043383
[exp]
117 / 7e-27 AT5G22470 1079 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1)
Lus10000104
[exp]
82 / 5e-19 AT4G02390 120 / 1e-33 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0084 ADP-ribosyl PF00644 PARP Poly(ADP-ribose) polymerase catalytic domain
CL0084 PF02877 PARP_reg Poly(ADP-ribose) polymerase, regulatory domain
CL0084 PF05406 WGR WGR domain
Representative CDS sequence
>Potri.014G128000.2 pacid=42762768 polypeptide=Potri.014G128000.2.p locus=Potri.014G128000 ID=Potri.014G128000.2.v4.1 annot-version=v4.1
ATGGCCGCGTCTTGCTTTTTTGAGAAGCCGTCGAAGAACTCAAAAAGTAAACAGTGCCAGTGCCTGTTTTTAACATGGCCATGCCCTCCACTTTCAATAC
TGCTCGGCTGCACTTCTAAAAGTCACGAAAGCTCGCTCGCTCCATCTCAAGCTTTTCTAATGGCAAACAGTCTCAAGAGGCCGTTAAAAGTCTCAACCGG
TCATGATGCTTCATCACTTGGCAACAAGAGGCAAAGGGAAGCACAAGTACTTGACGGTCCTGATATCGTGTCTGAGAAAATCAAGGCCATTGAAGATCTT
CACGACATGGGAACTCGCCAACTACGCGAACAAGCAATCCTCCGAGGCCTTTCTTCAAGTGGGTCAAAGAAAGAACTACTAGACAGGCTCTGTGCAGAGT
CAGAGAAAGAGTCAAAGAACGGTACACCTGAAGGCAAAGAAGAAGACGAAGAAAAAGAAACAAGCAACAAGGACGAGAAAGTTACTGCGAGTTTCAACAA
GGTCACTGCCGAGCTGGATCAGTATCTGCCTGATCATTTAAAGACACAGTACCATGTTCTAGAGCATGGGGATAGTATCTATGATGCCACGTTGAATCAA
ACAAATGTTGGGAATAATAACAACAAGTTCTATCTGATTCAGGCTCTTGAATCTAATGACTCTAGCAAATTCATGGTATACACTAGATGGGGTAGAGTAG
GAATTAAAGGTCAAGACAAGTTGCAAGGCCCTTACACATCAAGAGGCAGTGCTATTCAGGAGTTCGAAGCAAAATTTTTTGCCAAGACAAAGAACCGTTG
GCCCAACCGGAAAGATTTCATATGCCACCCAAAGTGCTATACTTGGTTGGAAACAGACCATGACATGAACAAAGAGTCGTCAGAGGAGAACCCTATTTTT
ACTGTTGAAAGGCAACTACAGGTTACAAGGCTTGATCCTCGAATTGCAAATTTTATCTCTCTTATCTGTGATGTTCGCATGATGAAGCAGCGGATGATGG
AATTAGGGTACAATGCAGAAAAGTTACCCCTTGGTAAGCTGAGCAAGTCGACAATCTTAAAGGGCTATGATGTCTTGAGGAGAATATGTGAGAATATTGG
CAAATCTGATACAGAAAAGCTTGAGGAGTTAAGTGGGGAATTCTACACAATAATACCTCATGACTTTGGTTTTAATAAGATGCGTGAATTTACCATTGAC
AACCATTACAAACTGAAATGCAAGCTGGAAATGGTTGAAGCTCTAGGGGAAATTGAAATAGCTACATCATTGATCAAGGATGATATCTACACCCAAAAAG
ATCCGCTCTATTCGAAATATCACTGCCTTCGTTGTGAATTGGTACCACTTGATGTTGTTTCCAAGGAATTCTCTATGATTGAAAAATACATACGTAACAC
TGGTGATGAAACACATTATAGAATCGACATTGTTCAAATATTTAGAGCTTCAAGAGAAGGTGAAAATGAACGGTTCAAAAAGTTCTCTCAAACAAAAAAC
AGAATGCTTTTGTGGCATGGTTCTCGGCTGACAAACTGGACCGGTATTTTGTCTGAAGGTTTACGTATTGCTCCTCCAGAAGCACCATCAACTCATTCTC
TTGGGAACGGGCTTTATTTTGGTGATATGTTTTCCAAAAGTGCACCTTATTGCCATGCTAACTGGATAAACTCAGATGCTGTGCTAGTTTTGTGTGAGGT
TGCACTGGGTGACATGCTTGATTATGGATCTTTTAACTGCCATGATAAGTTGCCAAAGGGAAAGCTAAGTGTAAAAGTAGCTGGAGGAACTGTCCCGGAC
TCTTCACAGGCTCAGGTTCTTGAAGACGGTGTTCTTGTTCCACTCGGAAAGCCAGTAGAGCTGCCTTATTCCCAGGGTATGTGGCCGAGAAATGAGTACA
TAATTCTTGACGTGGATCAGATTCGAATACGTTATGTGGTTCATGCAAAGTTCTGCTATCAAACCTGTTGA
AA sequence
>Potri.014G128000.2 pacid=42762768 polypeptide=Potri.014G128000.2.p locus=Potri.014G128000 ID=Potri.014G128000.2.v4.1 annot-version=v4.1
MAASCFFEKPSKNSKSKQCQCLFLTWPCPPLSILLGCTSKSHESSLAPSQAFLMANSLKRPLKVSTGHDASSLGNKRQREAQVLDGPDIVSEKIKAIEDL
HDMGTRQLREQAILRGLSSSGSKKELLDRLCAESEKESKNGTPEGKEEDEEKETSNKDEKVTASFNKVTAELDQYLPDHLKTQYHVLEHGDSIYDATLNQ
TNVGNNNNKFYLIQALESNDSSKFMVYTRWGRVGIKGQDKLQGPYTSRGSAIQEFEAKFFAKTKNRWPNRKDFICHPKCYTWLETDHDMNKESSEENPIF
TVERQLQVTRLDPRIANFISLICDVRMMKQRMMELGYNAEKLPLGKLSKSTILKGYDVLRRICENIGKSDTEKLEELSGEFYTIIPHDFGFNKMREFTID
NHYKLKCKLEMVEALGEIEIATSLIKDDIYTQKDPLYSKYHCLRCELVPLDVVSKEFSMIEKYIRNTGDETHYRIDIVQIFRASREGENERFKKFSQTKN
RMLLWHGSRLTNWTGILSEGLRIAPPEAPSTHSLGNGLYFGDMFSKSAPYCHANWINSDAVLVLCEVALGDMLDYGSFNCHDKLPKGKLSVKVAGGTVPD
SSQAQVLEDGVLVPLGKPVELPYSQGMWPRNEYIILDVDQIRIRYVVHAKFCYQTC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G02390 ATPARP1, APP POLY\(ADP-RIBOSE\) POLYMERASE ... Potri.014G128000
[exp]
0 1
AT1G75540 CO LHUS, AtBBX21, ... long hypocotyl under shade, B-... Potri.002G028200
[exp]
4.47 0.9117 Pt-COL6.2
AT1G75540 CO LHUS, AtBBX21, ... long hypocotyl under shade, B-... Potri.005G234500
[exp]
5.65 0.9104 Pt-COL6.1
AT5G19875 unknown protein Potri.001G009200
[exp]
7.48 0.9028
AT2G30590 WRKY WRKY21 WRKY DNA-binding protein 21 (.... Potri.003G111900
[exp]
7.48 0.9005
AT4G32340 Tetratricopeptide repeat (TPR)... Potri.006G254300
[exp]
7.61 0.8690
Potri.008G136533
[exp]
8.36 0.8651
AT1G23780 F-box family protein (.1) Potri.017G134500
[exp]
9.38 0.8768
AT2G35790 unknown protein Potri.008G042800
[exp]
13.74 0.8706
AT1G78380 GST8, ATGSTU19 GLUTATHIONE TRANSFERASE 8, A. ... Potri.001G431700
[exp]
14.28 0.9071
AT4G23050 PAS domain-containing protein ... Potri.003G122700
[exp]
15.29 0.8634

Potri.014G128000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.