Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-APP.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02390 827 / 0 ATPARP1, APP POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) AT2G31320 335 / 4e-103 ATPARP2 poly(ADP-ribose) polymerase 2 (.1) AT5G22470 156 / 9e-40 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G128000 [exp] 659 / 0 AT4G02390 587 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Potri.002G041300 [exp] 332 / 1e-101 AT2G31320 1382 / 0.0 poly(ADP-ribose) polymerase 2 (.1) Potri.009G143900 [exp] 167 / 3e-43 AT5G22470 1120 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Potri.009G136501 [exp] 97 / 3e-23 AT4G02390 74 / 5e-16 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Potri.004G184100 [exp] 57 / 4e-08 AT5G22470 539 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007882 [exp] 874 / 0 AT4G02390 758 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Lus10030363 [exp] 707 / 0 AT4G02390 571 / 0.0 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1) Lus10033871 [exp] 333 / 2e-101 AT2G31320 1372 / 0.0 poly(ADP-ribose) polymerase 2 (.1) Lus10019539 [exp] 177 / 2e-47 AT5G22470 957 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Lus10043383 [exp] 170 / 2e-44 AT5G22470 1079 / 0.0 NAD+ ADP-ribosyltransferases;NAD+ ADP-ribosyltransferases (.1) Lus10000104 [exp] 141 / 5e-40 AT4G02390 120 / 1e-33 POLY\(ADP-RIBOSE\) POLYMERASE 1, poly(ADP-ribose) polymerase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0084 [poplar] [flax] ADP-ribosyl PF00644 [poplar] [flax] PARP Poly(ADP-ribose) polymerase catalytic domain CL0306 [poplar] [flax] HeH PF02037 [poplar] [flax] SAP SAP domain CL0306 [poplar] [flax] PF02877 [poplar] [flax] PARP_reg Poly(ADP-ribose) polymerase, regulatory domain CL0306 [poplar] [flax] PF05406 [poplar] [flax] WGR WGR domain
Representative CDS sequence Show only first row Show all	>Potri.014G128200.1 pacid=42763949 polypeptide=Potri.014G128200.1.p locus=Potri.014G128200 ID=Potri.014G128200.1.v4.1 annot-version=v4.1 ATGGCAAATAAGCTCAAAGTAGACGAGCTTCGAGCCGAACTCGCTAAACGTGGACTCGATACCACCGGAACCAAGCCTTCCCTGGTGCGGAGACTGGAAT CGGCACTCGAGCAAGAAAACAAGCAGTCAGAAGTGGACTCGGTCGATGGTGGAGGTAGTAGTAACAACAAAAGAGAAAGGGAGTCTGAAGATGGAGGAGG AGATTCTAATAACGGGACAGAGAAAATCAAGGCTATTGAAAAGTTTCGGGACATGAATGTTAAGCAATTACGCGAACAGGCCAGTCTCCTTGGAGTTTCC ACTGCCGGAACCAAGAGACAATTAATTGACAGGCTCTGCAACGCTGAACCAGACAATCACCATTCACTTCAACCAAAAGAAGAAGAGCAGGAACAGGGTG AAAAGGAAAAGGATAAAATTGTAACTGCTACGAAAAAGGGCGCGGCGGTGCTAGATCAGTTTCTTTCTGATCAGATAAAGTCAGAGTATCATGTTTTGCA AATAGGTGATGATGTCTATGATGCCATGCTGAATCAGACAAATGTTGGGGACAACAATAACAAGTTCTATGTGATTCAACTTCTTGAATCTGATGGTGGT GGTAGATATATGGTCTATAACAGATGGGGTAGGGTTGGGGTGAATGGTCAAGTTAAGCTATTTGGTCCCTACACTTCACGAGATCCTGCTGTTTCTGAGT TTGAACGGAAGTTCTACGCCAAGACAAAGAACGATTGGTCCAAGCGAAAGGAGTTCATATGTTACCCAAAGTGCTATGCTTTGTTGGAAATGGACTACAG TGAGCAGGAAAAGGAGCCAGTTGTTAAAGAAAAGCTTGACTCTGCTATAGCAATTCAACCTCGGGAGACACAACTTGAGTCACGTATTGCCAAATTTATC TCTCTTATATGTAATGTTAGTATGATGAAGCAGCAAATGATGGAAATAGGATACAATGCAAATAAATTGCCACTTGGTAAATTAAGCAAGTCAACTATAT TAAAGGGTTATGATGTTTTGAAGAGGATTTCTGATGTAATTGGAACAGCAGATATGTTAAAACTTGAACAACTAAGCGGAGAATTTTACACTGTCATTCC TCATGATTTTGGATTTAAAAAAATGCGAGAGTTTGTTATTGATACTCCTCAGAAGTTAAAATGCAAGCTGGAAATGGTTGAAGCCCTAGGCGAGATTCAA GTTGCAACAAAGTTGTTGGAGGATGAACCTGGAATGCAGGAAGATCCCCTGTATTCTCATTACAACCGGCTACGTTGTGAATTGACTCCAGTTGAAGTTG ATTCTGAGGACTTTGCAATGATTGCCATGTATTTGCAGAATACGCATGCAAAAACACATTCACAGTATACTGTTGATATTGCTCAAATATTCAAGGTCTC AAGAGAGGATGAAAATGAAAGCTTCAGAAAGTTCTCTAACACAAAAAATAGAATGCTTTTATGGCATGGCTCGCGCCTCACAAACTGGACTGGCATTCTA TCCCAAGGCTTGCGTATTGCTCCCCCTGAAGCACCAGTAACTGGTTACATGTTTGGAAAGGGAGTTTACTTTGCTGACATGTTCTCCAAAAGTGCAAATT ATTGCTATGCAAATCATGCTGCTCCAGCTGGTGTGCTGCTTCTGTGTGAGGTTGCTCTTGGAGACATGGCTGAACTATTATATGCAAACTATGATGCTGA TAAGTTGCCATCGGGGAAGCTAAGCACGAAAGGAGTTGGTAGAACTGCTCCAGATCTTTCAGATGCCAGGGCACTGGAGGATGGTGTTGTTGTTCCCCTT GGGAAGCCCAAAGAGCAGCGAGGCTCAAAGGGTGCTTTGCTGTACAATGAGTACATAGTCTACAACGTGGGTCAGATTAGGATGCGATATGTAGTTCAAG TGAATTTTAATTACAAGCATTAA
AA sequence Show only first row Show all	>Potri.014G128200.1 pacid=42763949 polypeptide=Potri.014G128200.1.p locus=Potri.014G128200 ID=Potri.014G128200.1.v4.1 annot-version=v4.1 MANKLKVDELRAELAKRGLDTTGTKPSLVRRLESALEQENKQSEVDSVDGGGSSNNKRERESEDGGGDSNNGTEKIKAIEKFRDMNVKQLREQASLLGVS TAGTKRQLIDRLCNAEPDNHHSLQPKEEEQEQGEKEKDKIVTATKKGAAVLDQFLSDQIKSEYHVLQIGDDVYDAMLNQTNVGDNNNKFYVIQLLESDGG GRYMVYNRWGRVGVNGQVKLFGPYTSRDPAVSEFERKFYAKTKNDWSKRKEFICYPKCYALLEMDYSEQEKEPVVKEKLDSAIAIQPRETQLESRIAKFI SLICNVSMMKQQMMEIGYNANKLPLGKLSKSTILKGYDVLKRISDVIGTADMLKLEQLSGEFYTVIPHDFGFKKMREFVIDTPQKLKCKLEMVEALGEIQ VATKLLEDEPGMQEDPLYSHYNRLRCELTPVEVDSEDFAMIAMYLQNTHAKTHSQYTVDIAQIFKVSREDENESFRKFSNTKNRMLLWHGSRLTNWTGIL SQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYANHAAPAGVLLLCEVALGDMAELLYANYDADKLPSGKLSTKGVGRTAPDLSDARALEDGVVVPL GKPKEQRGSKGALLYNEYIVYNVGQIRMRYVVQVNFNYKH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Potri.014G128200 [exp]	0	1	Pt-APP.2
AT3G01516			unknown protein		Potri.001G349700 [exp]	2.00	0.7267
AT3G01600	NAC	ANAC044	NAC domain containing protein ...		Potri.001G343800 [exp]	3.87	0.7215
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Potri.018G021100 [exp]	4.58	0.7569	PKL.1
AT5G12080		ATMSL10, MSL10	mechanosensitive channel of sm...		Potri.006G222500 [exp]	4.58	0.7050
AT5G49830		EXO84B	exocyst complex component 84B ...		Potri.008G009100 [exp]	10.67	0.6802
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187300 [exp]	11.83	0.6223
AT2G02170			Remorin family protein (.1.2)		Potri.008G144300 [exp]	13.41	0.6857
AT5G61820			unknown protein		Potri.012G110600 [exp]	15.87	0.6864
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.015G020200 [exp]	20.34	0.7107
AT5G47010		ATUPF1, UPF1, L...	LOW-LEVEL BETA-AMYLASE 1, RNA ...		Potri.001G148100 [exp]	22.22	0.7431

Compare expression of checked genes

Potri.014G128200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.