Plant FIBer expression Database

Potri.014G128300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02400 634 / 0 U3 ribonucleoprotein (Utp) family protein (.1)
AT5G08600 573 / 0 U3 ribonucleoprotein (Utp) family protein (.1), U3 ribonucleoprotein (Utp) family protein (.2)
AT5G36980 59 / 6e-10 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G203700
[exp]
1209 / 0 AT4G02400 627 / 0.0 U3 ribonucleoprotein (Utp) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030364
[exp]
754 / 0 AT4G02400 683 / 0.0 U3 ribonucleoprotein (Utp) family protein (.1)
Lus10007881
[exp]
707 / 0 AT4G02400 636 / 0.0 U3 ribonucleoprotein (Utp) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF04615 Utp14 Utp14 protein
Representative CDS sequence
>Potri.014G128300.1 pacid=42764541 polypeptide=Potri.014G128300.1.p locus=Potri.014G128300 ID=Potri.014G128300.1.v4.1 annot-version=v4.1
ATGAAGATGGTTGAGAAGAAGAGAAAATCGAGAGACGGTAAGAAACATGATAGACCACCAAAATTTAACAAAACGTCCAAATTCAATAAAAAATCTGGTA
AGAGAACGGACGAGAAGAGGCGGACCGGTCCTCGCTTGCCTCAATCTCTACGGAAAGAGCTCGATCGAGTTAACCGTAATGATCAGTACAGCAGTGAAGA
AGATGACCATGAAGGTGTTAGCAACGACGTTTATGAATACGAAGAAGGAGTTCCTGAAGAGGAATCCAAGAAGAACCGCCGCTTTGATTCCATTGAGAAT
TACGAGTATCAGTTACCTGAGGATTTTGAGGATGAGAATGTTGTTTCGGATGAAGACGACAATGATTTCGATGGTGTTGAAAATAAGATAGCTGGCCGGG
ATAGTAAAAGGGGAGATCTTGATAAACTTGGTGATGATGCTGAAGATGAAGATGAAGATGACGAAAGACATTTGAGGATGCTGCAAGGAATCACTGGAAT
GCCAAGCCAGGCCTTTGAAGGCCGCAAGAAGAACAAAGTTGTTGTATCTGAGGGATATCCAGAATCTGAATATAATCCTACCCGTGACATTCTAGATGGT
GATGGCCGCATTTCTATTGAAGACCTTATGGAAAGCATTCAAGGAAAACCTGGATATAGAGAGCTTCTAAATACAACTCGTCAAGTGGAGAAAAAGGGAA
AGCTGCTTCAAGCTCCACTTCCCAAGGAAGATCGAGACAGGTTGGAAAGAAAAGCTGCTTATGAGCTATCGAAGAAAGATATTACAAAATGGGAGCCCTT
GGTCAAGAGGAATAGGGAGACCCCTACCATTATTTTTGACAAAGACACAGATTTGGGGTTTTCAACTGTAGGGGCAATAGCTTCTGAATTTGAGCCTAGA
ACTGAGTTTGAGAAGAAAATGTCTTCATTAGTTCATGATGACAAGGTTACGACAGCTCATAAAGAAGATGGCTCAAAGCTTCTCGAATTAAATAAGATAT
CCCTTGAAGATTATGTAAACAACCGAAATCATATTGCGAAAATGCGCAGCCTTCTTTTCCGCCATGAAGTGAAGATGAAACGTGTCAAGAAGATAAAATC
AAAAACATACCATCGGTTGTTGAAGAAAGACAGATTGAAAGGATCTGTAGGGATGCCAATGGATGCAGAAGAAGCCAAAGAACTGGCAATGAAGCAAGAG
TTCAAACGTGCAGAGGAACGCATGACCTTAAGGCACAAAAACCAATCAAAGTGGGCACAACGCATTGTTAAGCGTGGTTTGGATGCCCAAGATGAAGGCA
CTCGAGTGGCTATGGCTGAACAACTCCATCAGCATGCTCTTTTGACTAGGAAAATGAAAACTATGAAGGACAGCAGCAGCAGCGATGACAGCAGCGATGA
GGAAGATAGCGAAAATGAAGGTGGTTCAGACCAGGATGAGGCATCTAAGTTACTAGCAAAAGCAAGAGATAAGACAATGCAAGTATTAGAAGGAGATGAT
GAAGTGCCTGATTCAGGAGTTCTTTCTTTACCTTTCATGAAACGGGCATTGAAGAAAAAGAAGGAAGCAGCTGATGCAGAAGCTAGGCTTGCTATTCAAG
ATTTTGAATCGTCAATGAAGCAGATGGAGGACACAGATGAGGCAGAAAATTCAAAAACAGGTACTGTGAGTGGTAGAAGGGTGTTTGGCGCGTCTAAGAT
GCAGGTTATAGAACCAAAAAATAAAATCAGATCAAGCAGTATTTCTAGTGATAGTGAAGCTGAGTTGGAAGCTGAAGAAGACAATGAGGTTGGTTTAGGC
AGAACAGATGGTATGCAAGAGAATATTAATGTCAACTCTGTTTTGCTTGATTTAGATGCCAGCATTCCTCAAGATTCTGTTTTGAAGGTTTCTGAAATTG
TTAGAGATCCAGGTCACAAGAAGACATATGAAGTTTCTATACTACAATCAGATGCATGGAAAAAGATGAGTAGCAGTTGTCCAAATGAAGTGGACACCAA
TGGCAAAAGGTCTCGGAAAGTTGTTGAACCTGCTATACATAATCAAGATGTAGAATTAGAGGAAGAAGGGGAGGATAGTGATGCGGATAGTGAAGGACAG
ATGGTTGATGGGATTTTATCTCCAGGGCACATATCATCTTACAAGCTTCCTTCCCAAGCAGAGCTTATACGTGAAGCTTTTGCCGGAGATGATGTGCAAG
AAGAATTTAGCAAGGATAAAGAGGAAATTATAAATGAGGAAAATCCTGAACCTGAAAAACCCGTTCAACTTCCTGGCTGGGGCCAATGGACTCGTGTACA
AAAAAAGAAAGGTTTGCCTTCATGGGTTTTGGAAGAGCACAAAAATGCAAAGAGAAAAAGGGAAGAGGCTCTTGGGAAAAGGAAGGATGCGCATCTTAAA
AATGTTATTGTCTCTGAGAAGTTGGATAAAAAGGCAGAAAAATTGTTTTCAGGAACATTGCCATACCCGTTCACATCAAAGGAAGTTTTTGAACAAAGTA
TCCGCATGCCTATTGGACCTGAATTCAATCCTGCAACAGCTGTCAGAGCTCTTAATCGACCTGAAGTGGTGAAAAAACAAGGGCTGATTATTCAACCAAT
CAACTATGAAGATGTGGATCCACATGAAAGAGGGGAGGAGCATAGAGGAAGTGGACAGAAACAAAGACAGAATCAAAGGATAATTCGGAGCCAAGGCAGA
GTATAG
AA sequence
>Potri.014G128300.1 pacid=42764541 polypeptide=Potri.014G128300.1.p locus=Potri.014G128300 ID=Potri.014G128300.1.v4.1 annot-version=v4.1
MKMVEKKRKSRDGKKHDRPPKFNKTSKFNKKSGKRTDEKRRTGPRLPQSLRKELDRVNRNDQYSSEEDDHEGVSNDVYEYEEGVPEEESKKNRRFDSIEN
YEYQLPEDFEDENVVSDEDDNDFDGVENKIAGRDSKRGDLDKLGDDAEDEDEDDERHLRMLQGITGMPSQAFEGRKKNKVVVSEGYPESEYNPTRDILDG
DGRISIEDLMESIQGKPGYRELLNTTRQVEKKGKLLQAPLPKEDRDRLERKAAYELSKKDITKWEPLVKRNRETPTIIFDKDTDLGFSTVGAIASEFEPR
TEFEKKMSSLVHDDKVTTAHKEDGSKLLELNKISLEDYVNNRNHIAKMRSLLFRHEVKMKRVKKIKSKTYHRLLKKDRLKGSVGMPMDAEEAKELAMKQE
FKRAEERMTLRHKNQSKWAQRIVKRGLDAQDEGTRVAMAEQLHQHALLTRKMKTMKDSSSSDDSSDEEDSENEGGSDQDEASKLLAKARDKTMQVLEGDD
EVPDSGVLSLPFMKRALKKKKEAADAEARLAIQDFESSMKQMEDTDEAENSKTGTVSGRRVFGASKMQVIEPKNKIRSSSISSDSEAELEAEEDNEVGLG
RTDGMQENINVNSVLLDLDASIPQDSVLKVSEIVRDPGHKKTYEVSILQSDAWKKMSSSCPNEVDTNGKRSRKVVEPAIHNQDVELEEEGEDSDADSEGQ
MVDGILSPGHISSYKLPSQAELIREAFAGDDVQEEFSKDKEEIINEENPEPEKPVQLPGWGQWTRVQKKKGLPSWVLEEHKNAKRKREEALGKRKDAHLK
NVIVSEKLDKKAEKLFSGTLPYPFTSKEVFEQSIRMPIGPEFNPATAVRALNRPEVVKKQGLIIQPINYEDVDPHERGEEHRGSGQKQRQNQRIIRSQGR
V

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G02400 U3 ribonucleoprotein (Utp) fam... Potri.014G128300
[exp]
0 1
AT4G25880 APUM6 pumilio 6 (.1.2.3) Potri.006G165100
[exp]
1.00 0.9441 Pt-PPD1.4
AT2G36480 ENTH/VHS family protein (.1.2.... Potri.006G115600
[exp]
2.00 0.9261
AT4G04885 PCFS4 PCF11P-similar protein 4 (.1) Potri.004G020300
[exp]
2.82 0.9197
AT5G27650 Tudor/PWWP/MBT superfamily pro... Potri.005G026800
[exp]
3.87 0.9242
AT1G36990 unknown protein Potri.002G089100
[exp]
5.29 0.9044
AT5G27650 Tudor/PWWP/MBT superfamily pro... Potri.013G018700
[exp]
5.47 0.9157
AT5G25520 SPOC domain / Transcription el... Potri.006G246800
[exp]
6.32 0.9126
AT5G62640 AtELF5, ELF5 EARLY FLOWERING 5, proline-ric... Potri.015G090200
[exp]
7.00 0.9128 ELF5.2
AT2G27100 C2H2ZnF SE C2H2 zinc-finger protein SERRA... Potri.004G196400
[exp]
7.41 0.9097
AT2G31240 Tetratricopeptide repeat (TPR)... Potri.005G222900
[exp]
7.74 0.9111

Potri.014G128300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.