Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53760 1076 / 0 ATGCP4 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) AT5G06680 99 / 5e-21 ATSPC98, SPC98, ATGCP3 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) AT5G17410 62 / 1e-09 Spc97 / Spc98 family of spindle pole body (SBP) component (.1), Spc97 / Spc98 family of spindle pole body (SBP) component (.2) AT3G43610 56 / 1e-07 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) AT1G80260 44 / 0.0003 EMB1427 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G194200 [exp] 111 / 6e-25 AT5G06680 1201 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.016G059900 [exp] 104 / 9e-23 AT5G06680 1301 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Potri.009G153300 [exp] 58 / 2e-08 AT3G43610 855 / 0.0 Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Potri.016G000100 [exp] 54 / 5e-07 AT1G80260 431 / 3e-137 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029779 [exp] 1050 / 0 AT3G53760 1049 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10042807 [exp] 1005 / 0 AT3G53760 1013 / 0.0 GAMMA-TUBULIN COMPLEX PROTEIN 4 (.1) Lus10016246 [exp] 112 / 2e-25 AT5G06680 1262 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10029296 [exp] 89 / 4e-18 AT5G06680 998 / 0.0 ARABIDOPSIS THALIANA GAMMA TUBULIN COMPLEX PROTEIN 3, spindle pole body component 98 (.1) Lus10018892 [exp] 49 / 2e-05 AT1G80260 919 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10028588 [exp] 47 / 9e-05 AT1G80260 942 / 0.0 embryo defective 1427, Spc97 / Spc98 family of spindle pole body (SBP) component (.1) Lus10003353 [exp] 41 / 0.0004 AT3G43610 136 / 2e-38 Spc97 / Spc98 family of spindle pole body (SBP) component (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0540 [poplar] [flax] GCP PF04130 [poplar] [flax] GCP_C_terminal Gamma tubulin complex component C-terminal
Representative CDS sequence Show only first row Show all	>Potri.014G128400.1 pacid=42762547 polypeptide=Potri.014G128400.1.p locus=Potri.014G128400 ID=Potri.014G128400.1.v4.1 annot-version=v4.1 ATGTTACACGAGCTGTTACTCTCACTCTTAGGCTACACTGGAGATCTCATTATCGATGAGAGAGAACACCAGAACTCTCTCGGCATTCCCGTCTCCGACG AACACCGCTCTTTCAAGCTCGCTCCTGATATCTCCTTCATCCAACCCAGCGACAGGGATCTTATTGAGAGGATAATCAGTCTAGGGTTTTATTATAGAGA GCTTGATCGATTTGCGACAAAGTCTCGGAATCTGAGTTGGATTAGGTCTGCAAATCCTAATAATGAATTGTCGAACAAGAATGTACAGGACAAACAGAGT GTTTATCGCAGAGCTATTGCTAATGGCATTGTTGAGATTCTTTCAGTTTACAGATCTGCTGTTCTCCACATTGAACAGAAGTTACTGTCAGAGAGCATTC CTATTTTGGCTACTATCACACAAGGTCTTAACAAGTTTTTTGTTCTCTTGCCGCCACTTTATGAGCTTGTTCTTGAGATTGAGCGCGATGATATTCGCGG AGGACAACTTCTAAACCTTTTGCACAAAAGATGTCACTGTGGGGTTCCTGAATTGCAATCATGCATTCAAAGGCTTCTTTGGCATGGGCATCAGGTCATG TATAATCAACTTGCTTCCTGGGTGGTTTATGGGATTCTTCAGGATCAGCATGGTGAATTTTTCATCAGAAGGCAGGAAGATAGGGATGTGGAGCATGGCT CATCTAATCAAGACATGTCAGAAAAATTGGCTCGCTTGTCAACTGATGATGCATCTTTAACAGATTGGCACTTGGGATTTCATATTTTTTTGGATATGCT GCCTGAGTATGTCCATATGCGTGTTGCTGAATCAATTCTTTTTGCTGGAAAAGCCATCAGGGTTCTCCGGAATCCAAGCCCAGCATTTCAGTTTAAGGAT CCTGTATATAATCAGCAGATACCAAAAGGTGCTCAAAAAAATCAAGTATCAACAGGACGCTTCCCCTTTCAGAAAGAGTCTTTTGAAGATACAAACTTGA TTGGAGAAGAATTACTTCCACAGTCCGAGGCTGACAAGATTGAAAATATGCTTCGAGACCTAAAGGAATCATCTGAATTTCACAAAAGATCATTTGAATG TGCTGTCGACTCTATTCGTGCTATCGCAGCTAGTCATCTTTGGCAGCTTGTGGTTGTGCGTGCTGACTTGAATGGCCACCTGAAGGCACTTAAAGACTAT TTTCTTTTGGCGAAAGGAGATTTTTTCCAGTGTTTTCTTGAGGAAAGTCGGCAAATGATGCGTTTGCCTCCTCGACAATCAACTGCTGAAGCTGATCTCA TGGTCCCATTCCAGCTGGCTGCTATAAAGACGATTGGTGAGGAGGAGAAGTACTTTTCCAGAGTATCCTTGCGGATGCCTTCATTTGGATCTGCGGTTAA ATCCTCCCAAGTAGATTTACCCAAGACTGGGAGTACAAGTGCTTCATTATCAAATGCTTCTTCAGAGATTTCTCTGGATGGATGGGATGGTATTGCTCTG GAATACTCTGTTGATTGGCCCCTACAGTTGTTCTTTACTCAGGAAGTGTTGTCTCAGTACCTAAGGGTCTTTCAGTATTTGCTACGGCTGAAACGTACGC AAATGGAATTGGAGAAATCATGGGCTTCTGTGATGCATCAAGATCACACAGATTTTGCCAAGCGTCGCAATGACCGTTTGAACTGCTCAGTATCTCAGCA ACGACGCCAACGTTTTAGGCCAATGTGGCATGTTAGAGAGCACATGGCATTCTTGATCAGAAATCTTCAGTTCTATATCCAGGTGGATGTAATAGAATCC CAATGGAATGTTTTGCAAGCTCATATTCGAGATTCTCATGACTTTACTGAACTTGTGGGCTTCCATCAAGAGTATTTATCAGCTTTAATTTCACAATCGT TTTTGGACATTGGTTCCGTGTCAAGGATATTAGACAGCATAATGAAACTTTGCCTGCAATTCTGCTGGAGCATTGAAAACCAAGAAAACAATCCAAATAC ATCTGAACTGGAGCATTTAACGGAGGAATTTAACAAGAAATCAAATTCGTTATACACTATATTGCGCAGTAGTAGGCTAGCAGGGAGCCAGCGAGCTCCA TTTCTCAGGCGTTTTCTTTTGCGTCTAAACTTTAATCTGTTCTTTGAGACAACTGCACAAGGTGTACTGAATATTGTTAGACCATCTCCAACACTCCCTG TTTTTAATCAACAATAG
AA sequence Show only first row Show all	>Potri.014G128400.1 pacid=42762547 polypeptide=Potri.014G128400.1.p locus=Potri.014G128400 ID=Potri.014G128400.1.v4.1 annot-version=v4.1 MLHELLLSLLGYTGDLIIDEREHQNSLGIPVSDEHRSFKLAPDISFIQPSDRDLIERIISLGFYYRELDRFATKSRNLSWIRSANPNNELSNKNVQDKQS VYRRAIANGIVEILSVYRSAVLHIEQKLLSESIPILATITQGLNKFFVLLPPLYELVLEIERDDIRGGQLLNLLHKRCHCGVPELQSCIQRLLWHGHQVM YNQLASWVVYGILQDQHGEFFIRRQEDRDVEHGSSNQDMSEKLARLSTDDASLTDWHLGFHIFLDMLPEYVHMRVAESILFAGKAIRVLRNPSPAFQFKD PVYNQQIPKGAQKNQVSTGRFPFQKESFEDTNLIGEELLPQSEADKIENMLRDLKESSEFHKRSFECAVDSIRAIAASHLWQLVVVRADLNGHLKALKDY FLLAKGDFFQCFLEESRQMMRLPPRQSTAEADLMVPFQLAAIKTIGEEEKYFSRVSLRMPSFGSAVKSSQVDLPKTGSTSASLSNASSEISLDGWDGIAL EYSVDWPLQLFFTQEVLSQYLRVFQYLLRLKRTQMELEKSWASVMHQDHTDFAKRRNDRLNCSVSQQRRQRFRPMWHVREHMAFLIRNLQFYIQVDVIES QWNVLQAHIRDSHDFTELVGFHQEYLSALISQSFLDIGSVSRILDSIMKLCLQFCWSIENQENNPNTSELEHLTEEFNKKSNSLYTILRSSRLAGSQRAP FLRRFLLRLNFNLFFETTAQGVLNIVRPSPTLPVFNQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G53760		ATGCP4	GAMMA-TUBULIN COMPLEX PROTEIN ...		Potri.014G128400 [exp]	0	1
AT3G50530		CRK	CDPK-related kinase (.1.2)		Potri.007G040800 [exp]	4.00	0.7560
AT5G59020			Protein of unknown function (D...		Potri.009G039300 [exp]	6.40	0.7002
AT3G08960			ARM repeat superfamily protein...		Potri.016G119900 [exp]	8.00	0.7370
AT1G61670			Lung seven transmembrane recep...		Potri.016G137700 [exp]	9.38	0.7590
AT3G08880			unknown protein		Potri.012G107200 [exp]	10.95	0.7296
AT4G00570		NAD-ME2	NAD-dependent malic enzyme 2 (...		Potri.014G079900 [exp]	12.56	0.6779
AT1G08800			Protein of unknown function, D...		Potri.005G220600 [exp]	12.84	0.6948
AT4G31600			UDP-N-acetylglucosamine (UAA) ...		Potri.018G009400 [exp]	14.24	0.7096
AT5G58100			unknown protein		Potri.018G150600 [exp]	14.42	0.7280
AT1G51980			Insulinase (Peptidase family M...		Potri.008G193200 [exp]	14.73	0.7451

Compare expression of checked genes

Potri.014G128400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.