Plant FIBer expression Database

ATMHX.1 (Potri.014G128600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol ATMHX.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G47600 777 / 0 ATMHX1, ATMHX MAGNESIUM/PROTON EXCHANGER 1, magnesium/proton exchanger (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007879
[exp]
765 / 0 AT2G47600 755 / 0.0 MAGNESIUM/PROTON EXCHANGER 1, magnesium/proton exchanger (.1)
Lus10030365
[exp]
678 / 0 AT2G47600 677 / 0.0 MAGNESIUM/PROTON EXCHANGER 1, magnesium/proton exchanger (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF01699 Na_Ca_ex Sodium/calcium exchanger protein
Representative CDS sequence
>Potri.014G128600.1 pacid=42763436 polypeptide=Potri.014G128600.1.p locus=Potri.014G128600 ID=Potri.014G128600.1.v4.1 annot-version=v4.1
ATGGCCTCCGCGTATAACCAAAGTGATGGCGGCAGATTTGGAGATACCAATATTGTTGGGCATGAAAAATGTGAAAGCTACTTTCTTTTCCGAGGCGAAA
CTACCCTTGGAGAGGGTTTTCGGACCTTCTTATATTTTCTTGGTCTTGCTTATTGTTTCATTGGATTATCAGCTATAACTGCTCGTTTTTTCCGGTCTAT
GGAGAATGTTGTTAAGCAGTCGAGGAAAGTGGTGGAGATTGACCCATACACGAATGCTGAAGTTATCAGATATGAGAAGGTGTGGAATTATGCAATTGCA
GACATTTCTTTGCTTGCCTTCGGGACCAGCTTTCCTCAGATTTCACTAGCTACTATTGATGCCATACAAAATATTGGCAACCTGTATGCTGGAGGGATGG
GTCCTGGAACACTTGTTGGCTCTGCTGCATTTGACCTTTTTCCAATCCATGCTGTTTGTGTTGTGGTTCCGAAAGCTGGAGAATTGAAAAAGATAGCTGA
TATAGGAGTTTGGCTGGTGGAGCTGTTTTGGTCTTTCTGGGCATACATTTGGCTTTATATAATTTTAGAGGTATGGACCCCAAATGTCATTACGCTTTGG
GAAGCCTTATTGACGGTATTGCAATATGGTTTACTGCTAATGCATGCTTATGCTCAAGACAAGCGCTGGCCTTACTTATCTCTTCCTATTCCAAGAACGG
AAAGGCCAGAGGAGTGGGTGCCGGGAGAGGTCCCTTCTCCTACGCACGAGAACAATGTGTATGGAGAAGAAAATAGGAATGTTGTTGACATATTCTCTAT
CCATTCAAATAATGGTACAGGTCCAGTCTATCAAAAAGTGCCTGTAACAGATGACGCAGCTGAATCCTCCAACAAACATTTTCACCAGGAGAAAGATTTA
CATGTGCTTTCTCTTTGGAAAGAGCAATTTGTGGATGCACTCACGTTGGAAAGTCTAGAAACAAGAAAACTAAACAGTATTCATCTACGGGTAGCAAGAA
TTTCCTGGCAACTAATCCTTGCACCTTGGAGACTTTTGTTCGCTTTTGTGCCTCCATATCATTTTGCTCATGGCTGGATTGCCTTTATTTTCTCTCTACT
ATTCATCAGTGGAATAGCTTACATTGTAACAAAGCTCACTGATGTCATAAGCTGTGTCACAGGAATAAATGCTTATGTCATTGCATTCACAGCATTAGCT
AGTGGAACTTCATGGCCGGATTTAGTGGCGAGTAAGATTGCTGCTGAACGCCAGACAACAGCAGACTCTGCCATTGCAAACATCACTTGCAGCAATTCGG
TGAACATATATGTAGGAATCGGTGTTCCATGGCTTATTGACACTGCCTACAATTTTTTCATGTACAACGAACCGTTGCGTATTCAAAATGCTGCTGGACT
CAGCTTTTCATTGCTTGTTTTCTTCTGTACTTCTATAGGCTGTATTGCTGTTCTCGTGCTCAGGCGTTTGACACTGAAAGCAGAACTTGGAGGGCCAAGG
ATCTGGGCATGGGTAACCTTTGTGTATTTCATGTTGCTTTGGATTATTTTTGTCGTGCTCTCCTCCCTCAGAGTCTCTGGCATTATTTGA
AA sequence
>Potri.014G128600.1 pacid=42763436 polypeptide=Potri.014G128600.1.p locus=Potri.014G128600 ID=Potri.014G128600.1.v4.1 annot-version=v4.1
MASAYNQSDGGRFGDTNIVGHEKCESYFLFRGETTLGEGFRTFLYFLGLAYCFIGLSAITARFFRSMENVVKQSRKVVEIDPYTNAEVIRYEKVWNYAIA
DISLLAFGTSFPQISLATIDAIQNIGNLYAGGMGPGTLVGSAAFDLFPIHAVCVVVPKAGELKKIADIGVWLVELFWSFWAYIWLYIILEVWTPNVITLW
EALLTVLQYGLLLMHAYAQDKRWPYLSLPIPRTERPEEWVPGEVPSPTHENNVYGEENRNVVDIFSIHSNNGTGPVYQKVPVTDDAAESSNKHFHQEKDL
HVLSLWKEQFVDALTLESLETRKLNSIHLRVARISWQLILAPWRLLFAFVPPYHFAHGWIAFIFSLLFISGIAYIVTKLTDVISCVTGINAYVIAFTALA
SGTSWPDLVASKIAAERQTTADSAIANITCSNSVNIYVGIGVPWLIDTAYNFFMYNEPLRIQNAAGLSFSLLVFFCTSIGCIAVLVLRRLTLKAELGGPR
IWAWVTFVYFMLLWIIFVVLSSLRVSGII

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G47600 ATMHX1, ATMHX MAGNESIUM/PROTON EXCHANGER 1, ... Potri.014G128600
[exp]
0 1 ATMHX.1
AT3G51840 ATG6, ATSCX, AC... acyl-CoA oxidase 4 (.1) Potri.016G118000
[exp]
2.00 0.7857
AT2G20990 SYT1, NTMC2TYPE... SYNAPTOTAGMIN 1, ARABIDOPSIS T... Potri.009G134200
[exp]
4.69 0.7460
AT3G50830 ATCOR413-PM2, C... cold-regulated 413-plasma memb... Potri.007G033801
[exp]
6.70 0.7437
AT1G73760 RING/U-box superfamily protein... Potri.015G043900
[exp]
8.00 0.7269
AT1G62790 Bifunctional inhibitor/lipid-t... Potri.001G119000
[exp]
12.44 0.7204
AT4G16520 ATG8F autophagy 8f, Ubiquitin-like s... Potri.014G060300
[exp]
12.64 0.7056
AT2G28710 C2H2ZnF C2H2-type zinc finger family p... Potri.010G209400
[exp]
18.16 0.6930
AT2G39970 PXN, PMP38, APE... peroxisomal NAD carrier, perox... Potri.010G192600
[exp]
21.90 0.6684
Potri.016G019100
[exp]
22.75 0.6397
AT2G27600 ATSKD1, VPS4, S... VACUOLAR PROTEIN SORTING 4, SU... Potri.004G184500
[exp]
22.91 0.6662

Potri.014G128600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.