Plant FIBer expression Database

Potri.014G128900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G62880 176 / 3e-58 ATOEP16-4 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2)
AT2G28900 41 / 3e-05 OEP16, ATOEP16-L, ATOEP16-1 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007878
[exp]
123 / 2e-37 AT3G62880 107 / 3e-31 Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein (.1.2)
Lus10016545
[exp]
37 / 0.001 AT2G28900 185 / 4e-61 outer envelope protein 16, OUTER PLASTID ENVELOPE PROTEIN 16-L, outer plastid envelope protein 16-1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF02466 Tim17 Tim17/Tim22/Tim23/Pmp24 family
Representative CDS sequence
>Potri.014G128900.5 pacid=42763032 polypeptide=Potri.014G128900.5.p locus=Potri.014G128900 ID=Potri.014G128900.5.v4.1 annot-version=v4.1
ATGGAAGAAGAACTCATCGGCGCGGTGCCGTGCTCTTCCCTCGCTGTTGATTCCGTACTCCGTGTTGGAACGGCAGGTGCAATTTGGGGGTCATGCATAG
GTCCTTATGATGCTCGTAAAAGAGGCCTGACTGGCGTAGCTCAGGCTTCCTTTGTGGCAAAGACAATAGGGAAATTCGGTTTCCAATGTGGGCTTGTTGC
TGGAGTTTTTACTGCTACTTGTTGTGGAATTCAAAGATATAGGAGGCAGAATGACTGGGTGAATCCTCTAATTGCGGGTGCTGTGGCAGGGGCAGCTGTT
GCTGCTGGGACAAGAAGTTGGACACAGGTCGTTGGGATGGCTGGTCTGGTTTCTGCCTTTAGTGTTGCCGCTGACTATTCCAAAACCTTTTGA
AA sequence
>Potri.014G128900.5 pacid=42763032 polypeptide=Potri.014G128900.5.p locus=Potri.014G128900 ID=Potri.014G128900.5.v4.1 annot-version=v4.1
MEEELIGAVPCSSLAVDSVLRVGTAGAIWGSCIGPYDARKRGLTGVAQASFVAKTIGKFGFQCGLVAGVFTATCCGIQRYRRQNDWVNPLIAGAVAGAAV
AAGTRSWTQVVGMAGLVSAFSVAADYSKTF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G62880 ATOEP16-4 Mitochondrial import inner mem... Potri.014G128900
[exp]
0 1
AT4G37608 unknown protein Potri.009G004400
[exp]
15.36 0.7816
AT3G55380 UBC14 ubiquitin-conjugating enzyme 1... Potri.008G053900
[exp]
21.21 0.7696 Pt-UBC7.1
AT2G05630 ATG8D Ubiquitin-like superfamily pro... Potri.002G228800
[exp]
24.79 0.7811
AT1G18720 Protein of unknown function (D... Potri.010G166500
[exp]
26.38 0.7391
AT3G18080 BGLU44 B-S glucosidase 44 (.1) Potri.012G049300
[exp]
26.83 0.7308
AT3G11750 FOLB1 Dihydroneopterin aldolase (.1) Potri.016G067200
[exp]
28.91 0.7496
Potri.005G033300
[exp]
31.74 0.7504
AT2G42900 Plant basic secretory protein ... Potri.005G202300
[exp]
31.81 0.7036
AT3G55830 EPC1 ECTOPICALLY PARTING CELLS, Nuc... Potri.010G191700
[exp]
32.74 0.7530
AT4G22950 MADS AGL19 AGAMOUS-like 19 (.1) Potri.015G098400
[exp]
40.47 0.7113 CUS3.2

Potri.014G128900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.