Plant FIBer expression Database

Potri.014G129500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02425 189 / 5e-59 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G204700
[exp]
370 / 1e-130 AT4G02425 153 / 2e-45 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030370
[exp]
0 / 1 AT4G02425 142 / 2e-43 unknown protein
PFAM info
Representative CDS sequence
>Potri.014G129500.1 pacid=42764679 polypeptide=Potri.014G129500.1.p locus=Potri.014G129500 ID=Potri.014G129500.1.v4.1 annot-version=v4.1
ATGCCTCATACAAACCCTAATAAAAATCAAGAAGATCAATCAAAATCGATGGTAATGTCTCACAATTCACGGCACTCCATAGACTCCTGCACTCTCCAGC
TCCATTCATGGAGACCCTTTCTCGATTCCGACCCCCCCACCAATTCTAAACCCTACGCATCTTCCCGTACTCTCCCTAAACGCCCCTGCCTTTCCGATCG
CGCCACTTCTTTCCCTTCTAACATCGATTCCATCGACATTTCCAAGCTCTCTCTCCTCCAAGACGACGACAACAACAACAACAAACCTATCCCCGCCACT
CCAGCTGTTACCAATAGTCCCTACAAACGAGGTACCTTACGCCTTATCGAGCGCAAGAGGCGTCGCAGAGGATCCCGGTCCGTGTCCGGCCGGAGCTCCG
ATAGAAGTGGAACCTGGCGGTGTTGCTCTGTTGGTGCGGCTCATGGGACTTGCTCGGATTTCCCTGTGGCGGTGGGGACGGACTCTAGTGGGGAGCTGTT
TGTGAATGGGGATGCGAATTGGGCGTCGGATGTAAGTGAAGCCAAGAATTCGATAAAAGAGAGGGAGGAGAAAGAGAATTTGTTGGGAGTGGGTAGTGCT
TTTGGGAATTTGGATAGTGAGTCTGGGTATGGGAGTGAACCTGGGTATAGGGGGGATGCTGAGTTTGGTTATGGAGATGAGGTGGATGAGGAAGAGGATG
ATGCCAGGCTGTTATTTTGGGGACACCATTTTCAAGATTCTAAGATGGAAATGGTTGGAGAGAACACATTTGATCCAAAAACCCATCACAGATGTCGTCG
CAGGAAGCATGATTATAGAATGGTTGACTCATTGAGATAA
AA sequence
>Potri.014G129500.1 pacid=42764679 polypeptide=Potri.014G129500.1.p locus=Potri.014G129500 ID=Potri.014G129500.1.v4.1 annot-version=v4.1
MPHTNPNKNQEDQSKSMVMSHNSRHSIDSCTLQLHSWRPFLDSDPPTNSKPYASSRTLPKRPCLSDRATSFPSNIDSIDISKLSLLQDDDNNNNKPIPAT
PAVTNSPYKRGTLRLIERKRRRRGSRSVSGRSSDRSGTWRCCSVGAAHGTCSDFPVAVGTDSSGELFVNGDANWASDVSEAKNSIKEREEKENLLGVGSA
FGNLDSESGYGSEPGYRGDAEFGYGDEVDEEEDDARLLFWGHHFQDSKMEMVGENTFDPKTHHRCRRRKHDYRMVDSLR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G02425 unknown protein Potri.014G129500
[exp]
0 1
AT3G02468 CPuORF9 conserved peptide upstream ope... Potri.004G106750
[exp]
4.89 0.8354
AT4G17500 AP2_ERF ATERF-1, AtERF1 ethylene responsive element bi... Potri.001G079900
[exp]
6.48 0.8065
AT5G43210 Excinuclease ABC, C subunit, N... Potri.001G260300
[exp]
9.94 0.7759
AT5G49230 HRB1 HYPERSENSITIVE TO RED AND BLUE... Potri.019G027300
[exp]
13.82 0.6747
AT2G37340 RSZ33, ATRSZ33,... arginine/serine-rich zinc knuc... Potri.006G215200
[exp]
19.49 0.7451 RSZ33.2
AT1G04780 Ankyrin repeat family protein ... Potri.003G177000
[exp]
21.21 0.7383
AT3G61370 Protein of unknown function (D... Potri.016G069200
[exp]
24.06 0.8008
AT4G29000 CPP Tesmin/TSO1-like CXC domain-co... Potri.018G083000
[exp]
25.29 0.7837
AT4G25500 ATRSP40, AT-SRP... ARABIDOPSIS THALIANA ARGININE/... Potri.015G135800
[exp]
25.37 0.7383 RSP40.2
Potri.005G081700
[exp]
29.08 0.7136

Potri.014G129500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.