Plant FIBer expression Database

Pt-EID1.2 (Potri.014G130000) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-EID1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G02440 370 / 2e-128 EID1 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
AT5G39360 56 / 6e-09 EDL2 EID1-like 2 (.1)
AT5G15440 55 / 2e-08 EDL1 EID1-like 1 (.1)
AT3G63060 44 / 9e-05 EDL3 EID1-like 3 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G205150
[exp]
514 / 0 AT4G02440 371 / 9e-129 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
Potri.004G125000
[exp]
60 / 2e-10 AT5G39360 418 / 4e-150 EID1-like 2 (.1)
Potri.017G090300
[exp]
60 / 3e-10 AT5G39360 415 / 1e-148 EID1-like 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030373
[exp]
400 / 4e-140 AT4G02440 407 / 8e-143 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
Lus10007870
[exp]
391 / 1e-136 AT4G02440 399 / 9e-140 EMPFINDLICHER IM DUNKELROTEN LICHT 1, F-box family protein (.1)
Lus10029662
[exp]
59 / 6e-10 AT5G39360 423 / 4e-152 EID1-like 2 (.1)
Lus10018196
[exp]
58 / 1e-09 AT5G39360 364 / 6e-129 EID1-like 2 (.1)
Lus10025639
[exp]
58 / 2e-09 AT5G39360 429 / 2e-154 EID1-like 2 (.1)
Lus10042699
[exp]
58 / 2e-09 AT5G39360 428 / 4e-154 EID1-like 2 (.1)
Lus10028001
[exp]
50 / 1e-06 AT3G63060 312 / 6e-107 EID1-like 3 (.1)
Lus10000659
[exp]
45 / 3e-05 AT3G63060 212 / 1e-68 EID1-like 3 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0271 F-box PF00646 F-box F-box domain
Representative CDS sequence
>Potri.014G130000.1 pacid=42763407 polypeptide=Potri.014G130000.1.p locus=Potri.014G130000 ID=Potri.014G130000.1.v4.1 annot-version=v4.1
ATGACAGTGACCACGGATTTCTCAAGACTCTCAGAAGACGTGGTCCTCAACATCCTCTCCAAACTAGAAGACGATCCACGCAACTGGGCCCGCCTCGCTT
GTGTCTGCTCCAGATTCTCCTCTCTTGTACGCGACATCTGCTGGAGATCCAAGTGCAATAAAACCATCCCCTCTGTCGTCGCCGATCTCCTCCCCTCCCC
TGACTCCTCCTTCCCCGGCGGCTGGTCTGCCCTCTACAAGCTCGCCGTTTGCTGCCCTGGCCTCCTCCACGCCGGCGTCCTTCTCGAGCTCTCCGATTTT
GGCCTCGAACGCGAGCTTGGCCCCGACGATTATTTCCGCAAATCGAAAACCACACCGCCCATACCCCACCAACCACAACAAGCGTCTGATTCTTGTTCTA
ATTTAGAAAACTGCGATTCATCCTGGTCCTTATTTGACGATTTATATTACGACACCGTCTACAACGTATCTGAATCACAGGATGGGCCTGCTGCTAGCTG
TGAAGGGAATGAAGATGTTATCGGTGATAATGACGATAAAAGCGTTGATGTTGTTGACAAGGCAGGCGTCGATTTTTCTGTAAGCAAGAGAAGGAAAGTT
TGTTGTAGATCTTCGAGGTCTCATTTGGCATCTGGGGTTTGGAATTTGTGCAGAGAACAAGGGAATAAGCTATTAGCGAGTCGGTTTCGAGGGGATTGCT
TGTACATTTGTGATTGGCCCGGCTGTGTTCACACTGAAGAGAAGAGGAGTTATATGTTGTTTAGAGGGATTTTTAAGAATTTTAAGAAATCGAGGGTTTG
GAGAACGGTGCATGATGGGAATAGGAGCAAGACTGATTTGAATTGTGCGTTTTGTGAGTGTAAGGAGACTTGGGATTTGAATTCTGCATTTTGTTTGAAG
AGAGGGTGCGGGTATCATGATGATGGCGAGCCTGTTGTTCGGGCTTATGTTTGTGAAAATGGGCATGTCTCCGGTGCTTGGACTGATTGGCCATTGTACA
CTTGA
AA sequence
>Potri.014G130000.1 pacid=42763407 polypeptide=Potri.014G130000.1.p locus=Potri.014G130000 ID=Potri.014G130000.1.v4.1 annot-version=v4.1
MTVTTDFSRLSEDVVLNILSKLEDDPRNWARLACVCSRFSSLVRDICWRSKCNKTIPSVVADLLPSPDSSFPGGWSALYKLAVCCPGLLHAGVLLELSDF
GLERELGPDDYFRKSKTTPPIPHQPQQASDSCSNLENCDSSWSLFDDLYYDTVYNVSESQDGPAASCEGNEDVIGDNDDKSVDVVDKAGVDFSVSKRRKV
CCRSSRSHLASGVWNLCREQGNKLLASRFRGDCLYICDWPGCVHTEEKRSYMLFRGIFKNFKKSRVWRTVHDGNRSKTDLNCAFCECKETWDLNSAFCLK
RGCGYHDDGEPVVRAYVCENGHVSGAWTDWPLYT

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G02440 EID1 EMPFINDLICHER IM DUNKELROTEN L... Potri.014G130000
[exp]
0 1 Pt-EID1.2
AT5G48970 Mitochondrial substrate carrie... Potri.008G210000
[exp]
3.31 0.7251
AT4G11660 HSF AT-HSFB2B, HSFB... HEAT SHOCK TRANSCRIPTION FACTO... Potri.001G108100
[exp]
12.40 0.7178 Pt-HSF6.1
AT3G11900 ANT1 aromatic and neutral transport... Potri.016G064500
[exp]
12.72 0.6771 Pt-ANT1.2
AT1G08315 ARM repeat superfamily protein... Potri.001G028300
[exp]
13.41 0.6591
AT5G63440 Protein of unknown function (D... Potri.012G096500
[exp]
16.94 0.6820
AT3G48140 B12D protein (.1) Potri.010G055300
[exp]
17.54 0.7076
AT5G56140 RNA-binding KH domain-containi... Potri.011G168000
[exp]
20.00 0.6741
AT1G16770 unknown protein Potri.014G003300
[exp]
28.93 0.7091
AT4G35140 Transducin/WD40 repeat-like su... Potri.009G139000
[exp]
37.45 0.6448
Potri.008G125350
[exp]
42.42 0.6824

Potri.014G130000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.