Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02870 280 / 4e-97 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001459 [exp] 289 / 1e-100 AT1G02870 272 / 3e-94 unknown protein Lus10002436 [exp] 224 / 3e-75 AT1G02870 213 / 9e-71 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09420 [poplar] [flax] Nop16 Ribosome biogenesis protein Nop16
Representative CDS sequence Show only first row Show all	>Potri.014G130400.1 pacid=42762355 polypeptide=Potri.014G130400.1.p locus=Potri.014G130400 ID=Potri.014G130400.1.v4.1 annot-version=v4.1 ATGGGAGGGTCAAGAAGGAAATACAAGAATTCAAGGCCAAAAGTACGAGTGGGTCTCCCAAAGAAAAACCCTCACGTGTTCAAGCCAGCCTTCAATCTCC CTCCAAAGCTTCGCTCCCTTGCTGGCGCCGACATCTCCAAATGGGACGATAAGGCCAGTGTTATCCAAAACTACAAGTCTTTTGGTGTCGTTTCAAACCC TAACTTCCTAGGCGTCAGGTCCCGTACTTCTCATATCATTGAGACCGAATCGCTCCAAGTCGCTCCATCCCAGGAACAATTGGATGATGGGTCCGCAGAT GAGTTCGAACCCATTGATTCTGGAAGCGACCTCGAAGAAGATGATTTGAAATCTGCTCTAGGGAAGAAGCGGAGAGACGGAGAACATGCACCTTTGCAAC CATTGACCAAAATGCAGCGTGTTCATATTGGTCAGCTTGTTGAGAAATATGGAGATGACTATAGGAGGATGTTTATGGACACGAAGCTAAATGCTATGCA GCATTCAGTTGCAACTCTAGAGAAGTTGTGCGGAAGATACCATATGCATAAAGATAAAAATCCTCTGATAAGGAGTATTCAAACTCGTTGA
AA sequence Show only first row Show all	>Potri.014G130400.1 pacid=42762355 polypeptide=Potri.014G130400.1.p locus=Potri.014G130400 ID=Potri.014G130400.1.v4.1 annot-version=v4.1 MGGSRRKYKNSRPKVRVGLPKKNPHVFKPAFNLPPKLRSLAGADISKWDDKASVIQNYKSFGVVSNPNFLGVRSRTSHIIETESLQVAPSQEQLDDGSAD EFEPIDSGSDLEEDDLKSALGKKRRDGEHAPLQPLTKMQRVHIGQLVEKYGDDYRRMFMDTKLNAMQHSVATLEKLCGRYHMHKDKNPLIRSIQTR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02870			unknown protein		Potri.014G130400 [exp]	0	1
AT5G06240		EMB2735	embryo defective 2735 (.1)		Potri.016G074700 [exp]	1.41	0.8983
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Potri.015G077500 [exp]	1.73	0.8832
AT3G16640		TCTP	translationally controlled tum...		Potri.010G013400 [exp]	2.00	0.8861	Pt-TCTP.2
AT4G30330			Small nuclear ribonucleoprotei...		Potri.018G096200 [exp]	2.00	0.8800
AT5G67260		CYCD3;2	CYCLIN D3;2 (.1)		Potri.007G048300 [exp]	2.23	0.8596	Pt-CYCD3.3
AT3G02790	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.013G086400 [exp]	5.47	0.8314
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Potri.005G196600 [exp]	7.61	0.7858	Pt-RPS18.2
AT3G05700			Drought-responsive family prot...		Potri.013G011200 [exp]	10.24	0.8401
AT2G43770			Transducin/WD40 repeat-like su...		Potri.019G096900 [exp]	10.39	0.8570
AT1G02780		EMB2386	embryo defective 2386, Ribosom...		Potri.004G078000 [exp]	11.22	0.8151	Pt-RPL19.3

Compare expression of checked genes

Potri.014G130400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.