Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62700 2059 / 0 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) AT2G47800 2043 / 0 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) AT1G04120 1131 / 0 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT3G13080 1073 / 0 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) AT3G13090 1032 / 0 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1) AT3G60160 1030 / 0 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT3G13100 1012 / 0 ATMRP7, ABCC7 ATP-binding cassette C7, multidrug resistance-associated protein 7 (.1) AT3G21250 1003 / 0 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) AT3G59140 992 / 0 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) AT3G60970 894 / 0 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G205500 [exp] 2584 / 0 AT3G62700 2043 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Potri.002G255800 [exp] 1079 / 0 AT1G04120 2361 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Potri.014G193400 [exp] 1076 / 0 AT1G04120 2323 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Potri.001G362300 [exp] 1055 / 0 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.014G180100 [exp] 1049 / 0 AT3G60160 1930 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Potri.001G362200 [exp] 1038 / 0 AT3G13080 1952 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.015G023800 [exp] 1032 / 0 AT3G59140 1894 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Potri.003G034700 [exp] 1015 / 0 AT3G21250 1773 / 0.0 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) Potri.012G033600 [exp] 1008 / 0 AT3G59140 1948 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011498 [exp] 1848 / 0 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) Lus10023139 [exp] 1693 / 0 AT3G62700 1659 / 0.0 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) Lus10022858 [exp] 1106 / 0 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10039320 [exp] 1031 / 0 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10027567 [exp] 1027 / 0 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10018027 [exp] 1018 / 0 AT3G60160 1863 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10042023 [exp] 1014 / 0 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10024965 [exp] 1011 / 0 AT1G04120 2176 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10004896 [exp] 966 / 0 AT3G21250 1727 / 0.0 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) Lus10017548 [exp] 964 / 0 AT3G59140 1544 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.014G130500.2 pacid=42762783 polypeptide=Potri.014G130500.2.p locus=Potri.014G130500 ID=Potri.014G130500.2.v4.1 annot-version=v4.1 ATGAGTTCTTCATCATGGATCAACTCTCTCTCATGCTCAAGCTATGTGGTTCAGTCTTCAGGGGAAACATCTATTCCATTGATATTTCAATGGTTAAGAT TCATTTTCCTTTCTCCATGTCCTCAAAGAGCTCTGTTATCTTCAGTTGACCTTTTGTTCTTGCTTTTCCTCCTCGGATTTGCGGCTCAAAAGCTGCATTC TAGATTCACTTCCAGTGGATACTCCGGCTCTGACATCAACTATCCCCTTGTTGGAAATGGAAACAGCAGAGCTCATATCACAACTTCTATTTGGTTCAAG CTCTCTTTGATTGTACCAGTCTTTTTAGCTTTGTGTTACATTGTCGTCTCCATTCTAGCATTCAGTCAAAGCACTCAGTTGCCACGTTGGAAGGTGCTTG ATGGAGTGTTTTGGTTAGTTCAAGCAATAACTCAACTAGTGGTTGCAATCTTGATAATTCATGAAAAGAGGTTTCATGCTGTCACTCATCCACTATCTCT TCGAATTTATTGGGTTGCAAATTTCATCATCATTAGTATGTTTATGTCATCAGGGATCATTCGATTGGTAGCTCTGGAACACAACTTGTTATTTGATGAT ATAGTTTCTGCAATGGCTTTCACGTTATCAATTGTTCTTTTTTCCGTTGCCATTAAAGGATCGACTGGGATTACTGTAATCAGGCATTCTGAATCAGTAA TGCATGATGACACCAAATTACATGAACCTCTTTTGGGAAAATCCAATGTGACTGGCTTTGCTACGGCTTCTATAATATCTAAGTCCTTTTGGCTTTGGAT GAATCCCCTACTGCGTAAGGGCTACAAATCTCCGCTCAAGATAGATGATGTGCCTACTCTTTCACCAGAGCATAGAGCTGAAAAAATGTCACAGCTCTTT GAATCCAGTTGGCCTAAACCACATGAAAAGTCAAACCACCCTGTTCGAACCACGTTGTTGAGGTGCTTTTGGAAGGAAATTTCCTTCACTGCGTTCCTTG CAATCTTGCGGCTCTCTGTCATGTATGTTGGGCCTATGCTCATCCAAAGCTTTGTCGATTACACATCTGGGAAAAGAACCTCTCCCTATGAAGGATATTA CCTTGTATTGATTCTTCTTGTCGCAAAATTTGTTGAGGTTTTGACTGACCATCAATTTAACTTCAATTCTCGGAAACTTGGGATGCTCATTAGATGTACT CTCATCACTTCTTTATACAAGAAAGGGCTTATGTTATCATGTTCTGCTCGTCAAGCTCACGGAGTTGGACAGATTGTGAATTACATGGCCGTTGATGCCC AGCAGCTCTCTGATATGATGTTGCAGTTGCACTCTATATGGTTAATGCCATTGCAAGTTGGTGTTGGCTTAGCGCTCCTATACAATGCTCTAGGTACCTC GGCAGTCACAGCATTGATTGGAACTCTTGGTGTTATTGTGTTTGCTGTGTTTAGCAACAAAAGAAATAATAAGTTCCAGAGAAATGTGATGATAAATCGC GATTCAAGGATGAAGGCAACAAATGAGATGCTGAATTACATGCGTGTGATCAAATTCCAAGCATGGGAAGACCACTTCAACAAGAGAATCCAAGATTTTC GTGATTCAGAATTTGGATGGATTTCCAAGTTTTTGTACTCAATCTCTATCAACACGATTGTGATGTGGAGCACACCATTGCTAGTATCAACTCTGACATT TGGTACCGCTCTCCTGTTGGGAGTCCCGCTTGATGCAGGGACAGTATTCACAACGACATCTATCTTTAAAATGTTGCAGGAGCCTATCAGGGTATTCCCT CAAGCTATGATATCACTTTCACAAGCAATGGTATCTCTTGCGAGGTTGGATTGTTACATGCTAAGCAAGGAATTGGTGGAAGAGTCGGTAGAAAGAGTGG ATGCTTGCGATGGTAGAATCGCTGTGGAGGTTAAGGGTGGGATATTTAGTTGGGATGATGAAGCTAAAGGTGAGGTTTTGAACAATATAAATTTGGAGAT AAAAAAAGGGAAGCTTACTGCTATTGTTGGGACTGTGGGATCTGGGAAATCTTCTCTCCTTGCCTCAATCCTCGGTGAGATGCACAAAATATCTGGAAAG ATCAGGATTTGTGGAACAACTGCCTATGTTGCCCAAACATCATGGATTCAAAATGGCACCATTGAGGATAACATATTATTTGGTTTGCCAATGAATAAGG AGAGATACAAGGAAGTTCTCAGGGTTTGTTGCTTGGAGAAAGACTTGGAGATGATGGAGTTCGGAGATCAGACTGAAATTGGAGAGCGTGGCATCAACCT CAGTGGTGGGCAAAAGCAGCGGATACAACTTGCGAGGGCTGTTTATCAGGACTGTGATATCTATCTTCTTGATGATATTTTTAGTGCTGTTGATGCGCAT ACTGGGACTGATATATTTAAGCAATGTGTTAGAGGCGCACTGAAGGGAAAGACTATCTTACTTGTGACCCACCAAGTCGACTTCTTGCACAATGTTGATC TTATCTCAGTCATGCGAGATGGACAGATAGTACAATCAGGAAAATACAATGATCTATTAGCGTCTGGATTGGATTTTGGAGCACTAGTAGCTGCTCATGA AACTTCTATGGAACTTCTAGAAGTCAGTGCTGAAATTCCTAGTGAAAACTCACCCACGCCACCGAAGTTCTCTCAAGGCCTCTCCAAAATTGGGGAAGAA AATGATGAAAACAAGCTTCTAGATCAACCAAAGTCAGATAAGGGAAATTCAAAGCTCATTGAAGAAGAGGAAAGAGCAACTGGTAACGTAGGACTGCATG TGTATAAACAATACTGCACCGAAGCTTTTGGATGGTGGGGTGCAGTTGTGGCTTTGCTATTGTCCCTGGTATGGCAAGCATCTCTAATGGCTGGAGATTA TTGGTTGGCTTTTGAAACTGCAGATGAGCGGGCTGCAACATTCAAGCCTTCACTATTTATATCTGTCTATGGAATTATTGCAGCTGTATCAGTGGTGTTC TTAATAATGAGATCCCTTTTCTTCACGCTAATGGGGCTTAAGACAGCCCAAAATTTTTTTGGCGGTATTCTTCGAAGTATCTTGCACGCACCCATGTCAT TTTTTGACACCACACCTTCAGGAAGAATATTAAGTCGAGCATCAGCTGATCAAACCAACGTCGATATCTTCCTTCCCTTTATGTTCTCCCATGCAATTGC AATGTACGTCACAGTATTCAGCATCATTGTAATTGTATGTCAGTATACTTGGCCAACTGTGTTCTTAATAATTCCGCTTGGCTGGCTAAACTGGTGGTAC CGGGGATACTTTCTTGCAGCATCGCGAGAATTAACTCGACTCGACTCAATTACCAAAGCTCCTGTGATTCATCACTTTTCAGAAAGCATCTCTGGAGTTA TGACAATTAGGTCTTTCAGAAAACAGGATAGATTCTGTCAGGAAAATGTTAGCCGAGTGAATGCCAATTTGTGCATGGATTTTCACAACAACGGATCAAA TGAGTGGTTGGGTTTCCGTTTGGAACTGATTGGGAGCATCATACTTTGCGCTTCTGCTATGTTCTTGATTCTATTACCTAGCAGCATTATAAGGCCAGAG AACGTTGGTTTATCTCTCTCCTACGGGCTATCCCTCAATTCTGTGCTGTTCTGGTGCATATATTTAAGTTGCTTTGTGGAAAATAGAATGGTCTCTGTTG AGAGGATCAAACAATTCACTAATATTTCATCAGAGGCAGCATGGAAGATAGAGGACAGGGTTCCTCCTCCAAACTGGCCTGCCATTGGCAATGTTGATCT AAAGGACTTGCAGGTTAGATATCGTCCAAACACTCCTCTGGTTCTCAAGGGCATTACTCTCAGCATTCAAGGTGGAGAGAAGATAGGTGTTGTTGGACGT ACAGGGAGTGGAAAGTCAACTATGATCCAAGTCTTCTTTAGGCTGGTTGAACCAACAGGCGGAAAAATAATTATCGATGGCATTGATATCTGCATGTTAG GACTCCATGATCTCAGGTCTCGTTTTGGCATAATTCCTCAAGAACCTGTCCTCTTTGAAGGAACCGTGAGAAGCAACGTGGATCCTGTTGGACAGTATAC AGACGAGGAGATATGGGAGAGTCTTGAACGCTGTCAACTGAAAGATGTTGTGGCTGCAAAACCCGAAAAACTTGATTCTCCAGTGACTGATAACGGAGAC AACTGGAGCGTCGGGCAAAGGCAGCTTCTTTGTTTGGGGAGAGTTATGCTAAAGCACAGTCGTCTGTTGTTTATGGATGAAGCAACTGCTTCAGTTGATT CGCAAACTGACGCTGTGATTCAGAAGATCATTAGAGAGGAATTTGCTGATTGTACAATTATCAGCATTGCTCACAGAATACCCACAATCATGGACTGTGA CAGGGTTTTAGTTATCGATGCAGGACGGTCGAAAGAATTTGATAAACCCTCTCGGTTGCTTGAGAGGCCATCACTGTTTGGGGCATTGGTTCGGGAGTAT GCCAACCGCTCGGCTGAATTATAA
AA sequence Show only first row Show all	>Potri.014G130500.2 pacid=42762783 polypeptide=Potri.014G130500.2.p locus=Potri.014G130500 ID=Potri.014G130500.2.v4.1 annot-version=v4.1 MSSSSWINSLSCSSYVVQSSGETSIPLIFQWLRFIFLSPCPQRALLSSVDLLFLLFLLGFAAQKLHSRFTSSGYSGSDINYPLVGNGNSRAHITTSIWFK LSLIVPVFLALCYIVVSILAFSQSTQLPRWKVLDGVFWLVQAITQLVVAILIIHEKRFHAVTHPLSLRIYWVANFIIISMFMSSGIIRLVALEHNLLFDD IVSAMAFTLSIVLFSVAIKGSTGITVIRHSESVMHDDTKLHEPLLGKSNVTGFATASIISKSFWLWMNPLLRKGYKSPLKIDDVPTLSPEHRAEKMSQLF ESSWPKPHEKSNHPVRTTLLRCFWKEISFTAFLAILRLSVMYVGPMLIQSFVDYTSGKRTSPYEGYYLVLILLVAKFVEVLTDHQFNFNSRKLGMLIRCT LITSLYKKGLMLSCSARQAHGVGQIVNYMAVDAQQLSDMMLQLHSIWLMPLQVGVGLALLYNALGTSAVTALIGTLGVIVFAVFSNKRNNKFQRNVMINR DSRMKATNEMLNYMRVIKFQAWEDHFNKRIQDFRDSEFGWISKFLYSISINTIVMWSTPLLVSTLTFGTALLLGVPLDAGTVFTTTSIFKMLQEPIRVFP QAMISLSQAMVSLARLDCYMLSKELVEESVERVDACDGRIAVEVKGGIFSWDDEAKGEVLNNINLEIKKGKLTAIVGTVGSGKSSLLASILGEMHKISGK IRICGTTAYVAQTSWIQNGTIEDNILFGLPMNKERYKEVLRVCCLEKDLEMMEFGDQTEIGERGINLSGGQKQRIQLARAVYQDCDIYLLDDIFSAVDAH TGTDIFKQCVRGALKGKTILLVTHQVDFLHNVDLISVMRDGQIVQSGKYNDLLASGLDFGALVAAHETSMELLEVSAEIPSENSPTPPKFSQGLSKIGEE NDENKLLDQPKSDKGNSKLIEEEERATGNVGLHVYKQYCTEAFGWWGAVVALLLSLVWQASLMAGDYWLAFETADERAATFKPSLFISVYGIIAAVSVVF LIMRSLFFTLMGLKTAQNFFGGILRSILHAPMSFFDTTPSGRILSRASADQTNVDIFLPFMFSHAIAMYVTVFSIIVIVCQYTWPTVFLIIPLGWLNWWY RGYFLAASRELTRLDSITKAPVIHHFSESISGVMTIRSFRKQDRFCQENVSRVNANLCMDFHNNGSNEWLGFRLELIGSIILCASAMFLILLPSSIIRPE NVGLSLSYGLSLNSVLFWCIYLSCFVENRMVSVERIKQFTNISSEAAWKIEDRVPPPNWPAIGNVDLKDLQVRYRPNTPLVLKGITLSIQGGEKIGVVGR TGSGKSTMIQVFFRLVEPTGGKIIIDGIDICMLGLHDLRSRFGIIPQEPVLFEGTVRSNVDPVGQYTDEEIWESLERCQLKDVVAAKPEKLDSPVTDNGD NWSVGQRQLLCLGRVMLKHSRLLFMDEATASVDSQTDAVIQKIIREEFADCTIISIAHRIPTIMDCDRVLVIDAGRSKEFDKPSRLLERPSLFGALVREY ANRSAEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62700		ATMRP10, ABCC14	ATP-binding cassette C14, mult...		Potri.014G130500 [exp]	0	1
AT4G13420		HAK5, ATHAK5	high affinity K+ transporter 5...		Potri.001G069799 [exp]	1.73	0.9832
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Potri.002G184700 [exp]	2.00	0.9723
AT1G65610		ATGH9A2 ,KOR2	KORRIGAN 2, ARABIDOPSIS THALIA...		Potri.008G079500 [exp]	5.19	0.9688
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Potri.010G139600 [exp]	5.19	0.9801	CYP749A9
					Potri.001G130800 [exp]	5.65	0.9696
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Potri.010G139500 [exp]	7.41	0.9657
AT3G53480		PIS1, ABCG37, P...	polar auxin transport inhibito...		Potri.002G188900 [exp]	8.36	0.9665
					Potri.012G045950 [exp]	10.09	0.9524
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.002G209602 [exp]	12.04	0.9709
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.006G248500 [exp]	16.09	0.9697

Compare expression of checked genes

Potri.014G130500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.