Plant FIBer expression Database

Potri.014G130600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G47790 492 / 1e-174 Transducin/WD40 repeat-like superfamily protein (.1)
AT1G49040 45 / 6e-05 SCD1 STOMATAL CYTOKINESIS-DEFECTIVE 1, stomatal cytokinesis defective / SCD1 protein (SCD1) (.1), stomatal cytokinesis defective / SCD1 protein (SCD1) (.2), stomatal cytokinesis defective / SCD1 protein (SCD1) (.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G205600
[exp]
630 / 0 AT2G47790 534 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001029
[exp]
530 / 0 AT2G47790 552 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
Lus10003441
[exp]
291 / 3e-98 AT2G47790 317 / 2e-108 Transducin/WD40 repeat-like superfamily protein (.1)
Lus10014674
[exp]
41 / 0.0009 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0186 Beta_propeller PF00400 WD40 WD domain, G-beta repeat
Representative CDS sequence
>Potri.014G130600.1 pacid=42763241 polypeptide=Potri.014G130600.1.p locus=Potri.014G130600 ID=Potri.014G130600.1.v4.1 annot-version=v4.1
ATGGAAGGAACGACAGAGATGGAGATTGAGGAACCGAAATCAAAGAAATTCGGGCTAAAAAACTCAATTCAAACCAATTTCGGCAACGACTATGTTTTCC
AAATTGTCCCAAAGGATGACTGGTCGTCAGTGGCGGTGTCGCTATCGACAAAAGCAGTGAAGCTTTATTCTCCAGTGACAGGTCAGTTCCAAGGAGAGTG
TAAAGGTCACTCTGATACTATCAATCAAATTGCATTCTCTGTTTCATCGTCTCCGCATCTTTTGCATTCTTGCTCTTCTGACGGTACTATCAGAGCTTGG
GACACCAGAAATTTCCAACAGGTTTCGTGTATAGATTCCGGCTCTTCTCAAGAGATTTTCAGCTTTTCATTTGGAGGTTCTAATGATAATCTTCTTGCTG
CTGGCGCTAAGTCTCAGGTACTTTTCTGGGATTGGAGGAATGGGAAGCAAGTTGCATGTTTGGAGGAATCTCATATTGAAGATGTTACTCAGGTTCACTT
TGTCCCTGACAATAGAAACAAGCTTCTTTCAGCTTCCGTTGATGGGTTGATGTGTATATTTAATACTGATGGGGATATCAACGATGACGATGATCTGGAA
TCAGTGATTAATGTTGGAACTTCAATCGGGAAAGTGGGGTTTTTTGGAGAGACATATCAGAAGCTCTGGTGTTTGACACATATCGAAAGTTTAAGTATTT
GGGATTGGAAGGATTCAAGAAATGAAGCAAACTTTCTGGAAGCTCGCTCATTAGCCTCTGACAGCTGGACATTAGACCATGTTGATTATTTTGTTGATTG
CCACTACCCCGGAGAAGGTGATAGTTTATGGTTAATCGGTGGCACTAATGCCGGTGCTTTAGGTTATTTTCCTGTAAATCATAAAGGAATTGGATCTCCA
GAAGCAATTCTTGGAGGGGGGCACACAGGTGTTGTCAGGAGTGTATTGCCCATGTCAAGCATGAAGGGGGGACCTGCCCAAAGCCGAGGCATATTTGGAT
GGACAGGTGGTGAGGATGGTCGACTATGTTGCTGGTTGTCCGACGATTCCACTGGGATAAATCGATCATGGATTTCAAGTGCATTGGTTAAGAAATCACC
AAAGGCTCGCAAGAAAAAACGGCGTACTCCTTACTAG
AA sequence
>Potri.014G130600.1 pacid=42763241 polypeptide=Potri.014G130600.1.p locus=Potri.014G130600 ID=Potri.014G130600.1.v4.1 annot-version=v4.1
MEGTTEMEIEEPKSKKFGLKNSIQTNFGNDYVFQIVPKDDWSSVAVSLSTKAVKLYSPVTGQFQGECKGHSDTINQIAFSVSSSPHLLHSCSSDGTIRAW
DTRNFQQVSCIDSGSSQEIFSFSFGGSNDNLLAAGAKSQVLFWDWRNGKQVACLEESHIEDVTQVHFVPDNRNKLLSASVDGLMCIFNTDGDINDDDDLE
SVINVGTSIGKVGFFGETYQKLWCLTHIESLSIWDWKDSRNEANFLEARSLASDSWTLDHVDYFVDCHYPGEGDSLWLIGGTNAGALGYFPVNHKGIGSP
EAILGGGHTGVVRSVLPMSSMKGGPAQSRGIFGWTGGEDGRLCCWLSDDSTGINRSWISSALVKKSPKARKKKRRTPY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G47790 Transducin/WD40 repeat-like su... Potri.014G130600
[exp]
0 1
AT5G22100 RNA cyclase family protein (.1... Potri.009G016000
[exp]
3.74 0.8334
AT3G57000 nucleolar essential protein-re... Potri.006G040600
[exp]
3.87 0.8238
AT3G63090 Ubiquitin carboxyl-terminal hy... Potri.002G220000
[exp]
5.19 0.7951
AT4G15010 Mitochondrial substrate carrie... Potri.001G222400
[exp]
6.32 0.8149
AT3G12270 ATPRMT3 ARABIDOPSIS THALIANA PROTEIN A... Potri.001G030200
[exp]
7.74 0.8322
AT3G46210 Ribosomal protein S5 domain 2-... Potri.018G043600
[exp]
8.77 0.7938
AT1G80270 PPR596 PENTATRICOPEPTIDE REPEAT 596 (... Potri.016G036100
[exp]
11.48 0.8072
AT4G28200 unknown protein Potri.007G040000
[exp]
12.80 0.8210
AT4G39300 unknown protein Potri.004G154800
[exp]
14.00 0.7889
AT1G60080 3'-5'-exoribonuclease family p... Potri.006G051200
[exp]
14.14 0.7951

Potri.014G130600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.