Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02460 936 / 0 PMS1 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) AT4G09140 156 / 4e-39 ATMLH1 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) AT4G35520 100 / 5e-21 MLH3, ATMLH3 MUTL protein homolog 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G078700 [exp] 153 / 3e-38 AT4G09140 1071 / 0.0 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) Potri.005G101900 [exp] 101 / 1e-21 AT4G35520 763 / 0.0 MUTL protein homolog 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030376 [exp] 1011 / 0 AT4G02460 963 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Lus10007866 [exp] 810 / 0 AT4G02460 763 / 0.0 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Lus10010284 [exp] 196 / 9e-56 AT4G02460 193 / 3e-55 POSTMEIOTIC SEGREGATION 1, DNA mismatch repair protein, putative (.1) Lus10033274 [exp] 152 / 6e-38 AT4G09140 1066 / 0.0 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) Lus10034734 [exp] 132 / 2e-31 AT4G09140 504 / 3e-167 ARABIDOPSIS THALIANA MUTL-HOMOLOGUE 1, MUTL-homologue 1 (.1) Lus10016691 [exp] 94 / 4e-19 AT4G35520 360 / 8e-105 MUTL protein homolog 3 (.1) Lus10035985 [exp] 83 / 7e-16 AT4G35520 354 / 1e-102 MUTL protein homolog 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [poplar] [flax] S5 PF01119 [poplar] [flax] DNA_mis_repair DNA mismatch repair protein, C-terminal domain CL0329 [poplar] [flax] PF08676 [poplar] [flax] MutL_C MutL C terminal dimerisation domain CL0025 [poplar] [flax] His_Kinase_A PF13589 [poplar] [flax] HATPase_c_3 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Potri.014G130800.1 pacid=42764685 polypeptide=Potri.014G130800.1.p locus=Potri.014G130800 ID=Potri.014G130800.1.v4.1 annot-version=v4.1 ATGGAATCCTCCGCAATCACTATCAGGCCTATAAACAAAGCCGCTGTCCACAGAATCTGCGCTGGTCAAGTGATTTTGGACCTCTCATCCGCAGTCAAGG AGCTTGTTGAAAACAGCTTGGATGCTGGCGCTACTTCCATCGAAATCTCTTTGAAAGACTACGGCCTGGAATCCTTCCAGGTCATCGATAATGGCTGCGG CGTCTCTCCTAATAATTTCAAGGTTCTGGCACTTAAGCACCACACCTCCAAATTGGGGGACTTTCATGATCTTCAGTCTTTGACCACATTTGGTTTCAGA GGAGAGGCATTGAGTTCGCTTTGCGTGTTAGGAGACCTCACTGTTGAAACAAGGACCAAAAACGAGCCGGTGGCTACACACTTGACTTTTAATCATTCAG GTTTGTTAACAGCCGAGAGAAAGACAGCCCGACAGGTTGGCACGACAGTCACTGTTAAGAAGTTGTTTTCCAGTTTGCCGGTGCGAAGCAAAGAATTTAG CCGCAACATTCGCAAGGAATACGGAAAGCTTATTTCTTTATTGAATGCCTATGCTCTTATTTCAAAAGGCGTTCGCATAGTCTGCTCTAACACAACTGGT AAAAATGCAAAGTCTGTAGTACTAAAAACCCAAGGAAGTGATTCCCTTAAAGATAACATCATAACAGTGTTTGGCGTGAACACCTTCAGCTGCTTAGAAC CTGTGGATATAGATATATCAGGCAGTTGCAAGGTTGAAGGCTTCCTTTCTAAGTCTGGTCAAGGCAGTGGTCGCAATTTGGGTGATAGACAATACTATTT TGTAAATGGTCGACCAGTGGACATGCCTAAAGTCAGCAAGCTTGTGAATGAACTATACAAAGGTGCAAACTCCCGACAATATCCCATCGCAATCATGAAT TTCACCATTCCAACTACAGCGTGTGATGTTAATGTGACTCCTGACAAAAGAAAAATATTCTTTTCTGATGAGAGCTCTATACTGCTTGCTCTAAGGGAGG GACTGGAAAAAAATTATTCTTCAAGTAATTCCTGTTATTCTGTTAATAAATTTGAGAATCATGCTAAGGCAGCAGATAGCTCTCAGCTGTGCTCTCCTCG CGAGAAATCTAATATGTTATCAAAACAATCATCTGCAAATGGCAATGATAGTGAAGAAACTCAAACAGATGCAGAGGACAGCAGTCCACTCATGACAGTT GAAGTCAAATCTAAGCCCTTTCAAGTTGGAGAAAGATCTATCCATGACATCGAAGAAAAGTTTATGATGAAGGACTTTGCTCTTAGATTACATGGCATTA AGAAAACTGATAGTCTTACAAACAGTAACAGCTGCAAAGCAACGACACATCTCAATATTGTGACGGATCAAAATGCACAATGCCCGTCAAGAGTGGTTGA GCGAGTAAAGGGGGATTCAAATGGTCCTTCAGGCTCCTTTCAATCAAAACTCAGCAATTTTTTAACTGTCAATAAGAGAAAGCGTGAAGACATTACTACA CAATTGTCTGAAGTTCCTGTTCTAAGAAATCAGACCTCTGAATGTCAATTGAAGAAAAGTGATATTGACATTCATGATGCGGTTACAAGTCTTCCTTTTA ATCATCACCACATTGATGATTCTACTGAGTTTACTGATGCTGAGCCCCCCAAACATCACAGCACAGATGTGATCATCAATAAAACAAGGAATAATTCAGG ATTGCAGCCTAAACTTGCGGAGGATCCATCAGGTGAGCAAAATTCATCTTCTCCTGATGATGTCCCATCAATTACTACCCCTTGCAAAGGGCTTGGAAAT TTGTTAGAGGATCTTCCTGTTGCCTCTCCTCCAGCTCAATCTTCCATCGAATTATTAGATGCTCCAGTGCCTTTTTCTGCCCAACAGATATGCTCCACCT TGCAATTTAGCTTTCAAGACCTGCATTCAAGAAGGATGCAGAGGCTGTCAAGGTTGCAATCTGGCAAATTCACGTTTGGAGGCTCAAAGAGAAGTCATAG GAGCTATGCTGCTGCTACACTGGAGCTCTCTCAACCAGACAATGAGGAGCGGAAATTAAGGGCTTTAGCTGCTGCTACAACTGAGTTAGAAAGACTATTC AGAAAAGAAGACTTTGGTAGAATGAAGGTGATTGGTCAATTTAATCTTGGTTTTATCATTGGGAAATTAGATCAGGATTTGTTTATCGTGGATCAGCATG CTGCTGATGAGAAGTATAATTTTGAGAGACTCTGTCAATCAACCATTTTAAACCAGCAGCCCTTGCTTCGGCCACTGAGGCTGGAGTTATCTCCAGAAGA GGAAGTAGTTGCTTCAATGAACCTAGACATAATCAGAAAAAATGGATTTGCTTTGGAAGAGGATCCACATGCACTACCTGGGCATCATTTTAAATTGAAA GCTGTTCCCTTTAGTAAGAACATAACTTTTGGAGTTGAAGATGTGAAGGATCTGATTTCTACTCTTGCTGATAGTCAAGGGGAATGCTCCATAATCAGTA GATACAAAATGGACACTGCTGATTCCGTCTGCCCATCAAGAGTTCATGCAATGTTTGCATCACGTGCATGCAGATCATCGGTTATGATTGGAGATGCACT AGGGAGGAATGAAATGCAGAAGATACTTGAGCATTTGGTCGATCTAAAGTCCCCCTGGAATTGCCCCCATGGCAGACCAACCATGCGCCATTTGATTGAC ATGTCATCCATTTACGAAAGGCCAGATGAAACGGAAGCGGGCTTGTGA
AA sequence Show only first row Show all	>Potri.014G130800.1 pacid=42764685 polypeptide=Potri.014G130800.1.p locus=Potri.014G130800 ID=Potri.014G130800.1.v4.1 annot-version=v4.1 MESSAITIRPINKAAVHRICAGQVILDLSSAVKELVENSLDAGATSIEISLKDYGLESFQVIDNGCGVSPNNFKVLALKHHTSKLGDFHDLQSLTTFGFR GEALSSLCVLGDLTVETRTKNEPVATHLTFNHSGLLTAERKTARQVGTTVTVKKLFSSLPVRSKEFSRNIRKEYGKLISLLNAYALISKGVRIVCSNTTG KNAKSVVLKTQGSDSLKDNIITVFGVNTFSCLEPVDIDISGSCKVEGFLSKSGQGSGRNLGDRQYYFVNGRPVDMPKVSKLVNELYKGANSRQYPIAIMN FTIPTTACDVNVTPDKRKIFFSDESSILLALREGLEKNYSSSNSCYSVNKFENHAKAADSSQLCSPREKSNMLSKQSSANGNDSEETQTDAEDSSPLMTV EVKSKPFQVGERSIHDIEEKFMMKDFALRLHGIKKTDSLTNSNSCKATTHLNIVTDQNAQCPSRVVERVKGDSNGPSGSFQSKLSNFLTVNKRKREDITT QLSEVPVLRNQTSECQLKKSDIDIHDAVTSLPFNHHHIDDSTEFTDAEPPKHHSTDVIINKTRNNSGLQPKLAEDPSGEQNSSSPDDVPSITTPCKGLGN LLEDLPVASPPAQSSIELLDAPVPFSAQQICSTLQFSFQDLHSRRMQRLSRLQSGKFTFGGSKRSHRSYAAATLELSQPDNEERKLRALAAATTELERLF RKEDFGRMKVIGQFNLGFIIGKLDQDLFIVDQHAADEKYNFERLCQSTILNQQPLLRPLRLELSPEEEVVASMNLDIIRKNGFALEEDPHALPGHHFKLK AVPFSKNITFGVEDVKDLISTLADSQGECSIISRYKMDTADSVCPSRVHAMFASRACRSSVMIGDALGRNEMQKILEHLVDLKSPWNCPHGRPTMRHLID MSSIYERPDETEAGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02460		PMS1	POSTMEIOTIC SEGREGATION 1, DNA...		Potri.014G130800 [exp]	0	1
AT2G25680		MOT1	molybdate transporter 1 (.1)		Potri.006G245900 [exp]	3.74	0.8433
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.003G110800 [exp]	9.38	0.8281
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Potri.001G078600 [exp]	9.48	0.8451
AT2G01830		CRE1, AHK4, WOL...	WOODEN LEG 1, WOODEN LEG, CYTO...		Potri.008G137900 [exp]	10.19	0.8823	CRE1.2,PHK2
AT3G60320			Protein of unknown function (D...		Potri.002G137600 [exp]	11.66	0.8622
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Potri.016G084500 [exp]	32.18	0.7937
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.011G091900 [exp]	39.94	0.7922	ARF6.4
AT1G63020		SMD2, PolIVa, S...	SILENCING MOVEMENT DEFICIENT 2...		Potri.001G111300 [exp]	86.42	0.8184
AT1G30330	ARF	ARF6	auxin response factor 6 (.1.2)		Potri.002G055000 [exp]	89.21	0.8007
					Potri.004G076300 [exp]	184.04	0.8140

Compare expression of checked genes

Potri.014G130800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.