Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02880 395 / 9e-141 TPK1 thiamin pyrophosphokinase1 (.1.2.3.4) AT2G44750 371 / 4e-131 TPK2 thiamin pyrophosphokinase 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G205800 [exp] 459 / 1e-165 AT1G02880 385 / 4e-136 thiamin pyrophosphokinase1 (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036348 [exp] 354 / 1e-124 AT1G02880 327 / 1e-113 thiamin pyrophosphokinase1 (.1.2.3.4) Lus10010283 [exp] 322 / 1e-112 AT1G02880 296 / 3e-102 thiamin pyrophosphokinase1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04263 [poplar] [flax] TPK_catalytic Thiamin pyrophosphokinase, catalytic domain PF04265 [poplar] [flax] TPK_B1_binding Thiamin pyrophosphokinase, vitamin B1 binding domain
Representative CDS sequence Show only first row Show all	>Potri.014G130900.3 pacid=42763482 polypeptide=Potri.014G130900.3.p locus=Potri.014G130900 ID=Potri.014G130900.3.v4.1 annot-version=v4.1 ATGGAGGTGATGACCCATTCTTCCACGTTCCTTCTTCCCAGTAACCACCACAGCTCCTCTGTAACCTACGCACTTGTCGTCCTTAACCGACCCCTCCCCA GATTCACCCCGCTTCTCTGGAACCACGCACAGGTGAGGGTGTGTGCTGATGGAGGTGCCAATCGGGTGTTCGACGAGATGCCTCTTTTGTTCCCTAGCGA TGACGCTCTTGATGTTCGACAAAGGTACAAGCCGGACATAATCAAAGGAGACATGGACTCAGTTCGGACAGAAGTACTGGACTTCTATTCCAACCTGGGA ACCAAGGTAGTTGATGAATCTCATGATCAGGACTCCACAGATCTACATAAGTGTGTAGCCTACATACGGGACCTCACTCCAAACTTGGATAAATCGAATC TCTGCATTCTTGTAGCTGGAGCACTTGGTGGACGATTTGACCACGAGGCTGGAAACATGAACGTGCTGTATCGTTTCTCAACCATGCGACTAATTCTTCT ATCGGATGATTGCCTAATCTACTTACTTCCAAGTACTCACCTTCATGAGATTTATATTCAATCTTCCGTCGAGGGTCCGCATTGCGGACTCATTCCAATA GGGATGCCATCTGTGAGCACCACAACAACAGGGCTTCAATGGGATCTCAATAACACGGAGATGAGGTTTGGTGATGTGGTAAGTACGTCAAACTTAGTCC GAGGAGAAAAAATAACGGTGCAGTCCAGTTCCGATCTTCTTTGGACGATATCCATTAAGGTGTAA
AA sequence Show only first row Show all	>Potri.014G130900.3 pacid=42763482 polypeptide=Potri.014G130900.3.p locus=Potri.014G130900 ID=Potri.014G130900.3.v4.1 annot-version=v4.1 MEVMTHSSTFLLPSNHHSSSVTYALVVLNRPLPRFTPLLWNHAQVRVCADGGANRVFDEMPLLFPSDDALDVRQRYKPDIIKGDMDSVRTEVLDFYSNLG TKVVDESHDQDSTDLHKCVAYIRDLTPNLDKSNLCILVAGALGGRFDHEAGNMNVLYRFSTMRLILLSDDCLIYLLPSTHLHEIYIQSSVEGPHCGLIPI GMPSVSTTTTGLQWDLNNTEMRFGDVVSTSNLVRGEKITVQSSSDLLWTISIKV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02880		TPK1	thiamin pyrophosphokinase1 (.1...		Potri.014G130900 [exp]	0	1
AT4G24010		CSLG2, ATCSLG1	ARABIDOPSIS THALIANA CELLULOSE...		Potri.010G074700 [exp]	5.47	0.8356
AT2G35940	HD	BLH1, EDA29	embryo sac development arrest ...		Potri.001G216600 [exp]	16.43	0.7850
AT5G38690			Zinc-finger domain of monoamin...		Potri.006G257400 [exp]	19.33	0.7694
AT5G04410	NAC	NAC2, ANAC078	Arabidopsis NAC domain contain...		Potri.010G229900 [exp]	28.72	0.8144	Pt-NAC2.1,NAC049
AT3G57810			Cysteine proteinases superfami...		Potri.010G234300 [exp]	42.98	0.7717
AT2G23890			HAD-superfamily hydrolase, sub...		Potri.018G100600 [exp]	46.86	0.7185
AT1G15490			alpha/beta-Hydrolases superfam...		Potri.003G059400 [exp]	54.22	0.7809
AT2G42520			P-loop containing nucleoside t...		Potri.016G061900 [exp]	57.84	0.7098
AT1G78600	CO	BBX22, DBB3, ST...	SALT TOLERANCE HOMOLOG 3, DOUB...		Potri.011G105400 [exp]	61.04	0.7670
AT1G33980		ATUPF3, UPF3	Smg-4/UPF3 family protein (.1....		Potri.003G005700 [exp]	66.96	0.7101

Compare expression of checked genes

Potri.014G130900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.