Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02485 239 / 2e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G31600 66 / 2e-12 AtTRM9 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G106300 [exp] 71 / 5e-14 AT1G31600 450 / 2e-159 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037635 [exp] 269 / 4e-91 AT4G02485 246 / 7e-83 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10015618 [exp] 258 / 7e-87 AT4G02485 238 / 1e-79 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Lus10037263 [exp] 60 / 4e-10 AT1G31600 459 / 4e-162 Arabidopsis thaliana tRNA methyltransferase 9, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF13532 [poplar] [flax] 2OG-FeII_Oxy_2 2OG-Fe(II) oxygenase superfamily
Representative CDS sequence Show only first row Show all	>Potri.014G131200.1 pacid=42763910 polypeptide=Potri.014G131200.1.p locus=Potri.014G131200 ID=Potri.014G131200.1.v4.1 annot-version=v4.1 ATGGAAGCGCTTCTAAGACAAGTCTTTGGCGACTCATCAGACAGCGAAGACAAAAGTGAAGAGAAAGAAGATTCGATAGACGATGTTGGATGCCACTCAA CCTCGGACCCAAACTACCCTACCTGGGAACCAATCAAGGAAATCAAAGGTTTATGGTTGTGCCGACACTTTCTCTCCCCTCATCAACAATCTACCTTCCT CTCCGCTATTCAAAACGAGGGATGGTTCCTTGAAGCCTCCAACAATCAGGCTATGAGATTTGGAGATCTTCCATCCTGGGCCATTGAGCTCTCTAATTCT ATTCGTGAGGTGGTTCTATACGGTGATCGTATCCATGAACCTCCTAGCTGTGCTGGCTCTGATAGGGGTGAAGCCGCCTGCTGGCTGCCGCCTGATTTGC TGTCGAGAGAACCCTTTTTTGATCAACTAATTGTAAATGTATACCAACCAGGTGAGGGGATCTGTGCACATGTTGACCTCATGCGCTTTGAAGATGGAAT TGCCATCGTTTCCTTGGAGTCCTCCTGCGTGATGCACTTCACGCAAGTTGGAGAGGTCTCTGACTGTGGCAAGGAACAACCAGAGCTGCCCATGATAAAG ATTCCTGTTTTCTTGATGCCAGGATCTCTAGTTCTATTGTTTGGGGATGCCCGGTACCTATGGAAGCATGAGATTAATCGAAAACCAGGATTTCAGATGT GGGAAGGGCAGGAAGTAAATCAGGAGAGGAGAACCTCTATAACTCTGAGAAAGCTTTGCCATGCCGAGTAG
AA sequence Show only first row Show all	>Potri.014G131200.1 pacid=42763910 polypeptide=Potri.014G131200.1.p locus=Potri.014G131200 ID=Potri.014G131200.1.v4.1 annot-version=v4.1 MEALLRQVFGDSSDSEDKSEEKEDSIDDVGCHSTSDPNYPTWEPIKEIKGLWLCRHFLSPHQQSTFLSAIQNEGWFLEASNNQAMRFGDLPSWAIELSNS IREVVLYGDRIHEPPSCAGSDRGEAACWLPPDLLSREPFFDQLIVNVYQPGEGICAHVDLMRFEDGIAIVSLESSCVMHFTQVGEVSDCGKEQPELPMIK IPVFLMPGSLVLLFGDARYLWKHEINRKPGFQMWEGQEVNQERRTSITLRKLCHAE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02485			2-oxoglutarate (2OG) and Fe(II...		Potri.014G131200 [exp]	0	1
					Potri.019G120400 [exp]	5.29	0.7659
AT4G28830			S-adenosyl-L-methionine-depend...		Potri.018G083800 [exp]	7.87	0.7518
					Potri.005G209300 [exp]	8.48	0.7025
AT3G62840			Small nuclear ribonucleoprotei...		Potri.002G204300 [exp]	11.83	0.7255
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Potri.004G127200 [exp]	12.12	0.7483
AT5G19630			alpha/beta-Hydrolases superfam...		Potri.001G013700 [exp]	12.16	0.6554
AT1G10865			unknown protein		Potri.008G010300 [exp]	12.64	0.6891
AT5G19680			Leucine-rich repeat (LRR) fami...		Potri.006G163900 [exp]	18.11	0.7115
AT3G54190			Transducin/WD40 repeat-like su...		Potri.013G091800 [exp]	18.43	0.6873
AT1G52740		HTA9	histone H2A protein 9 (.1)		Potri.018G032100 [exp]	18.73	0.6947

Compare expression of checked genes

Potri.014G131200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.