Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47770 155 / 5e-48 ATTSPO TSPO(outer membrane tryptophan-rich sensory protein)-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G206100 [exp] 271 / 9e-94 AT2G47770 179 / 3e-57 TSPO(outer membrane tryptophan-rich sensory protein)-related (.1) Potri.010G025200 [exp] 100 / 3e-26 AT2G47770 111 / 6e-31 TSPO(outer membrane tryptophan-rich sensory protein)-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010281 [exp] 147 / 4e-45 AT2G47770 126 / 6e-37 TSPO(outer membrane tryptophan-rich sensory protein)-related (.1) Lus10000500 [exp] 67 / 8e-14 AT2G47770 86 / 5e-21 TSPO(outer membrane tryptophan-rich sensory protein)-related (.1) Lus10037513 [exp] 62 / 8e-12 AT2G47770 86 / 4e-21 TSPO(outer membrane tryptophan-rich sensory protein)-related (.1) Lus10036346 [exp] 44 / 3e-05 ND 40 / 4e-04
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03073 [poplar] [flax] TspO_MBR TspO/MBR family
Representative CDS sequence Show only first row Show all	>Potri.014G131400.1 pacid=42763983 polypeptide=Potri.014G131400.1.p locus=Potri.014G131400 ID=Potri.014G131400.1.v4.1 annot-version=v4.1 ATGGACTCCCAAAATGCTAAACAGCGTATCAGAGACACAGACTACGATCCCAACATCTCCAACCCCACCAAGAGCAAAGACAACAGCAAGACCGTAAGAC TCAAACGCGAAAAGAGAGTAGCTATGGCCAAACGTGGAATTAGATCACTAGCCATAGCCGTTGCTCTTCCTCTCTCCTTGACCATCTCTAACCTGTATTT CTTCGGCACAACTAGGGGCTACGGAACGAGCACTGGGAGTATATCTATGCCCTTCTGGTTCCCACCTCCGTGGGCCTTGCACTTGACCTGCATGACGTCG AGTTTCTTGATGGGACTCTCGGCCTGGCTTGTTTGGGCTGAAGGCGGATTCCACAGGAACCCAGCGGCTCTCTATCTTTACTTGGCTCAGCTAGGCTTGA GTTTGGCTTGGGACCCGATTGTGTTTCGGATGGCAGCGCCGTGGGTAGGGTTGCTAGTTTGTTTAGCTACGTTTGCGGCTCTTGTTGGATGTTCTCGGCA GTTCAAAGAGGTGAATCCCATTGCAGGCGATCTGGTTAAGCCCTGTTTGGCATGGGCTTCGTTTTTAGCCATTGTAAATCTTAAGCTCCTTTTTCTTTGA
AA sequence Show only first row Show all	>Potri.014G131400.1 pacid=42763983 polypeptide=Potri.014G131400.1.p locus=Potri.014G131400 ID=Potri.014G131400.1.v4.1 annot-version=v4.1 MDSQNAKQRIRDTDYDPNISNPTKSKDNSKTVRLKREKRVAMAKRGIRSLAIAVALPLSLTISNLYFFGTTRGYGTSTGSISMPFWFPPPWALHLTCMTS SFLMGLSAWLVWAEGGFHRNPAALYLYLAQLGLSLAWDPIVFRMAAPWVGLLVCLATFAALVGCSRQFKEVNPIAGDLVKPCLAWASFLAIVNLKLLFL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Potri.014G131400 [exp]	0	1
AT1G07250		UGT71C4	UDP-glucosyl transferase 71C4 ...		Potri.014G026301 [exp]	2.00	0.8022
AT5G02020		SIS	Salt Induced Serine rich, unkn...		Potri.006G092400 [exp]	6.70	0.7693
AT4G26470			Calcium-binding EF-hand family...		Potri.001G471100 [exp]	24.16	0.7606
AT5G61430	NAC	ANAC100, ATNAC5	NAC domain containing protein ...		Potri.012G001400 [exp]	26.00	0.7656	NAC015
AT1G53380			Plant protein of unknown funct...		Potri.011G108000 [exp]	26.94	0.7643
AT2G41870			Remorin family protein (.1)		Potri.016G054400 [exp]	30.19	0.7562
					Potri.003G139000 [exp]	41.13	0.7580
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134300 [exp]	41.82	0.7563
AT1G70300		KUP6	K+ uptake permease 6, K+ uptak...		Potri.008G147400 [exp]	44.04	0.7409	Pt-KUP6.1
AT5G53590			SAUR-like auxin-responsive pro...		Potri.019G002201 [exp]	54.49	0.6834

Compare expression of checked genes

Potri.014G131400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.