Plant FIBer expression Database

Potri.014G131600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G47760 550 / 0 AtALG3, ALG3 Arabidopsis thaliana asparagine-linked glycosylation 3, asparagine-linked glycosylation 3 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10031921
[exp]
573 / 0 AT2G47760 543 / 0.0 Arabidopsis thaliana asparagine-linked glycosylation 3, asparagine-linked glycosylation 3 (.1.2.3)
Lus10035085
[exp]
362 / 3e-124 AT2G47760 347 / 8e-119 Arabidopsis thaliana asparagine-linked glycosylation 3, asparagine-linked glycosylation 3 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0111 GT-C PF05208 ALG3 ALG3 protein
Representative CDS sequence
>Potri.014G131600.1 pacid=42762997 polypeptide=Potri.014G131600.1.p locus=Potri.014G131600 ID=Potri.014G131600.1.v4.1 annot-version=v4.1
ATGGCTCTCAAACCAGGCAGAAAGCTACAACCCTCACGCTCACGAAGACCCCAGATTTTCAAAAACCCCAAAGCGGCCTTCGCATTGGCTTTAATTTTCA
TGGATGCCCTCCTCGTCGCTCTTATCATCGCTTACGTTCCCTATACCAAAATTGACTGGGACGCTTACATGTCACAGGTTACTGGGTTTCTTGGAGGAGA
AAGGGACTACACTAACTTGAAAGGCGATACGGGGCCACTGGTTTATCCTGCTGGTTTTCTGTATATTTACTCAGCCATTCGATTTATTACAGGAGGGGAG
GTTTATCCAGCTCAGATCTTGTTTGGCATCTTATACATCATAAACCTGTCTATCGTCATCTTCATCTATGTGAAAACTGAAGTGCTTCCTTGGTGGGCTC
TTATCCTGCTTTCTCTCTCAAAAAGAGTGCACTCGATCTTTGTTCTTCGCCTCTTCAATGACTGTTTTGCAATGACACTCCTCCATGCTGCATTGGCCAC
GATTCTTTACCAAAAGTGGCATCTGGGACTGATTCTTTTCAGTGGGGCTGTTTCGATAAAGATGAATGTGCTCCTCTATGCTCCACCTTTGTTACTCCTC
ATGTTGAAGGCTATGAATATCTACGGGGTGATATCGGCTTTAGCTTGTGCAGCCCTGGTTCAGATTTTGGCGGGGCTGCCCTTTTTAGTCTCACATCCGA
TCGCATATATATCAAGAGCCTTCAATCTTGGTCGTGTGTTCATCCACTTTTGGTCTGTTAACTTCAAGTTCATTCCTGAACCAGTTTTTGTATCAAAGCA
ATTTGCAATCTCTTTGCTGATTGCTCACCTTGGGTTGCTTGCTACTTTTGCTCATTATAAATGGTGCAGGCACGAAGGACGACTTTTTAAGTTTTTGCAT
TCTAAAGTTACATCTGCACTTTCAAGTTCTAGCAGTTCAGGCCTTAAGATTCTCAAGGAAGAACATATCATGACAACTCTGTTTGCTGGGAACTTCATTG
GCATTGTATGCGCTCGCTCGCTGCATTATCAATTTTATTCTTGGTACTTCTATAGCTTGCCTTACCTATTGTGGAAAACACATTTCCCAACATCACTCCG
TTTGATTTTGTTTGTAGGTGTGGAGTTTTGCTGGAATGTCTATCCTTCAAACAATTATTCATCTGCTCTTCTTCTCTGTCTCCATTTACTTATACTATGG
GGCCTATGGTCTGCTCAATCTGAATATCCTTATGTGGAGGAGAAATTGTCCACTAGAAAGAAGGAAAAATGA
AA sequence
>Potri.014G131600.1 pacid=42762997 polypeptide=Potri.014G131600.1.p locus=Potri.014G131600 ID=Potri.014G131600.1.v4.1 annot-version=v4.1
MALKPGRKLQPSRSRRPQIFKNPKAAFALALIFMDALLVALIIAYVPYTKIDWDAYMSQVTGFLGGERDYTNLKGDTGPLVYPAGFLYIYSAIRFITGGE
VYPAQILFGILYIINLSIVIFIYVKTEVLPWWALILLSLSKRVHSIFVLRLFNDCFAMTLLHAALATILYQKWHLGLILFSGAVSIKMNVLLYAPPLLLL
MLKAMNIYGVISALACAALVQILAGLPFLVSHPIAYISRAFNLGRVFIHFWSVNFKFIPEPVFVSKQFAISLLIAHLGLLATFAHYKWCRHEGRLFKFLH
SKVTSALSSSSSSGLKILKEEHIMTTLFAGNFIGIVCARSLHYQFYSWYFYSLPYLLWKTHFPTSLRLILFVGVEFCWNVYPSNNYSSALLLCLHLLILW
GLWSAQSEYPYVEEKLSTRKKEK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G47760 AtALG3, ALG3 Arabidopsis thaliana asparagin... Potri.014G131600
[exp]
0 1
AT2G24940 ATMAPR2 membrane-associated progestero... Potri.006G266200
[exp]
2.44 0.9666
AT1G28960 ATNUDX15, ATNUD... ARABIDOPSIS THALIANA NUDIX HYD... Potri.004G053200
[exp]
9.69 0.9060
AT4G33870 Peroxidase superfamily protein... Potri.003G053700
[exp]
9.79 0.9456
AT1G10070 ATBCAT-2 branched-chain amino acid tran... Potri.009G082700
[exp]
14.00 0.9488
AT5G62280 Protein of unknown function (D... Potri.002G147200
[exp]
17.49 0.9361
AT5G39050 PMAT1 phenolic glucoside malonyltran... Potri.004G109800
[exp]
19.49 0.9429
AT5G51810 AT2353, GA20OX2... gibberellin 20 oxidase 2 (.1) Potri.005G184400
[exp]
19.51 0.8466 GA20ox3
AT1G55210 Disease resistance-responsive ... Potri.003G216200
[exp]
20.04 0.8430
AT5G39050 PMAT1 phenolic glucoside malonyltran... Potri.004G109300
[exp]
25.51 0.9310
AT1G15780 unknown protein Potri.003G026510
[exp]
26.83 0.8909

Potri.014G131600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.