Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66520 251 / 2e-76 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 231 / 3e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G47530 228 / 3e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G42920 228 / 3e-68 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G31920 228 / 4e-68 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22410 226 / 1e-66 SLO1 SLOW GROWTH 1 (.1) AT5G56310 222 / 1e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G15930 226 / 2e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G33760 223 / 3e-66 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G28660 219 / 1e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G202600 [exp] 262 / 1e-81 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.004G043400 [exp] 259 / 5e-80 AT2G33760 775 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G073100 [exp] 247 / 6e-76 AT5G08305 600 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.011G052300 [exp] 247 / 2e-75 AT2G33760 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G141200 [exp] 244 / 7e-75 AT5G66520 407 / 1e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G252400 [exp] 240 / 1e-73 AT4G21065 496 / 8e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.016G065500 [exp] 241 / 7e-73 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G168800 [exp] 234 / 2e-70 AT2G02980 860 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G258766 [exp] 231 / 2e-69 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011900 [exp] 471 / 5e-164 AT5G66520 281 / 4e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 251 / 2e-76 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014298 [exp] 249 / 1e-75 AT5G66520 748 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026006 [exp] 245 / 3e-74 AT5G66520 746 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10002024 [exp] 240 / 1e-73 AT5G56310 344 / 6e-113 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007341 [exp] 236 / 1e-71 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10025490 [exp] 235 / 2e-70 AT2G33760 734 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004544 [exp] 229 / 3e-69 AT4G21065 461 / 2e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10030125 [exp] 223 / 4e-67 AT2G20540 618 / 0.0 mitochondrial editing factor 21 (.1) Lus10013319 [exp] 222 / 6e-66 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.014G132100.1 pacid=42763722 polypeptide=Potri.014G132100.1.p locus=Potri.014G132100 ID=Potri.014G132100.1.v4.1 annot-version=v4.1 ATGGATCTCAGAATTTCTTATACGCAAAAGGGTGAAAGAATCAATCACTCACTGTTGACGGCTGTGGCTTTCTTATACATTGATTTGCTGAAGAACACCA GTTTCGGGGCTGCTTCCCCCGCACATGTCATGAGAACATTCCAAGAGCTGAGCCCCATGATAAACAAGATAATCAATCTCCTAAACAAATGTGCTTCTCC AACTCACATCCACCAAATCCAATCCCAAATCATCCTCCATCATCTCCATTCCAACACCACACTTGCCTACCACTTCATTACTGCCTCCCAAAACTTTTCC CTCTTACGCTCATCCTTACCCCTCTTCTTCACCCACCTCCATAGACCCCATGTTTTCATTTGCAACACTCTCATCAGAGCCTTCTCTCGTATCCATGACC CTCACATTCCTTACTCAATTTACATCCACATGCACTACAACTCTATCCTTCCTAATAACTACACCTTCCCTTTTCTTTTCAAGTCCTTGTCGGACTGTAG GGACTACCTCAAATGCCAATGTGTTCATGCCCATGTCATAAGATTAGGTCATTTGAATGATATTTATGTCCAGAACTCTTTGCTTGATGTCTATGCTTCG TGCGGTTACATGGGGTTGTGCCGTGAAGTGTTTGATGAAATGTCTGACAGAGATGTTGTGTCGTGGACTGTTTTGATTATGGGGTACAGGAATGCTAAGA ATTATGCTGATGCTTTAATTGCGTTTGAGAAAATGCAATATGCGGGCGTGGTGCCTAATCATGTTACTATGGTGAATGCATTGGGTGCGTGTGGGAGTTT TAGAGCGATTGAAATGGGTGTTTGGATACATGATTTTATAAGTAGGAATGGATGGGATTTGGATGTGATTTTGGGAACTTCTTTGGTTGAAATGTATTTG AAATGCGGGAGGATTGATGAAGGGTTGAATGCTTTTAGAAGCATGAAAGAGAAGAATGTTTTTACTTGGAATGTTGTTATTCAAGGGCTAGGTTTTGCTA AAAGCGGGCAGGAAGCTGTTTGGTGGTTCAACAGAATGGAGGAAGAAGGATTCGAGGCGGATGAAGTCACTTTGGCTAACGTGCTTAATGCTTGCATCCA CTCAGGGTTGGTTGATATGGGTCGACAGATATTTAGTTCTTTGATCAATGGAAATTATGGATTCTCGCCTAGTCTGAAGCATTATGCATGTATGATTGAC CTCTTGACACGCGCCGGTTGTCTTGATGAAGCTTTCAAATTAATCAAAGAAATGCCTTTTGAACCCTCGAAGTCTATCTGGGGATCATTTCTGACTGGTT GTAGAGCTTGTGGAAACTTAGAATTAAGTGAGCTTGCAGCTAAGAAGCTTGCGGAACTGGAGTCAGATAATGGCACTTATTTTGTTTCTTCTATCTAA
AA sequence Show only first row Show all	>Potri.014G132100.1 pacid=42763722 polypeptide=Potri.014G132100.1.p locus=Potri.014G132100 ID=Potri.014G132100.1.v4.1 annot-version=v4.1 MDLRISYTQKGERINHSLLTAVAFLYIDLLKNTSFGAASPAHVMRTFQELSPMINKIINLLNKCASPTHIHQIQSQIILHHLHSNTTLAYHFITASQNFS LLRSSLPLFFTHLHRPHVFICNTLIRAFSRIHDPHIPYSIYIHMHYNSILPNNYTFPFLFKSLSDCRDYLKCQCVHAHVIRLGHLNDIYVQNSLLDVYAS CGYMGLCREVFDEMSDRDVVSWTVLIMGYRNAKNYADALIAFEKMQYAGVVPNHVTMVNALGACGSFRAIEMGVWIHDFISRNGWDLDVILGTSLVEMYL KCGRIDEGLNAFRSMKEKNVFTWNVVIQGLGFAKSGQEAVWWFNRMEEEGFEADEVTLANVLNACIHSGLVDMGRQIFSSLINGNYGFSPSLKHYACMID LLTRAGCLDEAFKLIKEMPFEPSKSIWGSFLTGCRACGNLELSELAAKKLAELESDNGTYFVSSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.014G132100 [exp]	0	1
AT1G05670			Pentatricopeptide repeat (PPR-...		Potri.006G223300 [exp]	2.64	0.9221
AT3G14730			Pentatricopeptide repeat (PPR)...		Potri.006G090900 [exp]	6.78	0.9099
AT3G48250		BIR6	Buthionine sulfoximine-insensi...		Potri.015G084800 [exp]	6.92	0.8781
AT5G08310			Tetratricopeptide repeat (TPR)...		Potri.005G090600 [exp]	7.34	0.9061
AT3G12770		MEF22	mitochondrial editing factor ...		Potri.010G063900 [exp]	8.00	0.9035
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.011G032312 [exp]	8.36	0.9024
AT2G37320			Tetratricopeptide repeat (TPR)...		Potri.016G082200 [exp]	8.66	0.8776
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G083900 [exp]	11.53	0.8997
AT2G22070			pentatricopeptide (PPR) repeat...		Potri.007G085500 [exp]	12.48	0.9020
AT5G39350			Tetratricopeptide repeat (TPR)...		Potri.004G124400 [exp]	12.96	0.8968

Compare expression of checked genes

Potri.014G132100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.