Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02970 530 / 0 ATWEE1, WEE1 WEE1 kinase homolog (.1) AT1G49580 89 / 2e-18 Calcium-dependent protein kinase (CDPK) family protein (.1) AT4G36070 86 / 1e-17 CPK18 calcium-dependent protein kinase 18 (.1.2) AT1G08650 84 / 1e-17 ATPPCK1, PPCK1 phosphoenolpyruvate carboxylase kinase 1 (.1.2) AT3G19100 86 / 2e-17 Protein kinase superfamily protein (.1) AT4G19110 84 / 3e-17 Protein kinase superfamily protein (.1.2.3) AT1G12680 84 / 6e-17 PEPKR2 phosphoenolpyruvate carboxylase-related kinase 2 (.1) AT3G61960 84 / 1e-16 Protein kinase superfamily protein (.1.2) AT3G49370 84 / 1e-16 Calcium-dependent protein kinase (CDPK) family protein (.1) AT1G50240 84 / 2e-16 FU FUSED, Protein kinase family protein with ARM repeat domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G208251 [exp] 756 / 0 AT1G02970 572 / 0.0 WEE1 kinase homolog (.1) Potri.013G046100 [exp] 92 / 2e-20 AT3G04530 366 / 1e-128 phosphoenolpyruvate carboxylase kinase 2 (.1) Potri.003G101600 [exp] 89 / 1e-18 AT4G19110 689 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.008G166500 [exp] 84 / 6e-18 AT1G08650 287 / 2e-97 phosphoenolpyruvate carboxylase kinase 1 (.1.2) Potri.014G107000 [exp] 87 / 1e-17 AT3G61960 652 / 0.0 Protein kinase superfamily protein (.1.2) Potri.005G135900 [exp] 86 / 1e-17 AT3G50530 954 / 0.0 CDPK-related kinase (.1.2) Potri.005G251500 [exp] 86 / 1e-17 AT1G12680 662 / 0.0 phosphoenolpyruvate carboxylase-related kinase 2 (.1) Potri.007G040800 [exp] 86 / 2e-17 AT3G50530 943 / 0.0 CDPK-related kinase (.1.2) Potri.010G031800 [exp] 86 / 2e-17 AT5G18700 1791 / 0.0 RUNKEL, EMBRYO DEFECTIVE 3013, Protein kinase family protein with ARM repeat domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041354 [exp] 581 / 0 AT1G02970 553 / 0.0 WEE1 kinase homolog (.1) Lus10036576 [exp] 547 / 0 AT1G02970 541 / 0.0 WEE1 kinase homolog (.1) Lus10029657 [exp] 86 / 2e-17 AT4G08480 520 / 9e-180 MAPK/ERK KINASE KINASE 2, mitogen-activated protein kinase kinase kinase 9 (.1) Lus10008303 [exp] 86 / 2e-17 AT4G19110 616 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10033278 [exp] 86 / 2e-17 AT4G19110 620 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10030182 [exp] 85 / 4e-17 AT3G61960 617 / 0.0 Protein kinase superfamily protein (.1.2) Lus10005135 [exp] 82 / 3e-16 AT3G61960 632 / 0.0 Protein kinase superfamily protein (.1.2) Lus10030134 [exp] 82 / 3e-16 AT5G19450 783 / 0.0 calcium-dependent protein kinase 19 (.1.2) Lus10014976 [exp] 82 / 4e-16 AT1G63700 704 / 0.0 YODA, MAP KINASE KINASE KINASE 4, EMBRYO DEFECTIVE 71, Protein kinase superfamily protein (.1) Lus10042698 [exp] 81 / 5e-16 AT4G08500 518 / 5e-179 MAPK/ERK kinase kinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.014G132400.4 pacid=42762748 polypeptide=Potri.014G132400.4.p locus=Potri.014G132400 ID=Potri.014G132400.4.v4.1 annot-version=v4.1 ATGAAGAGGAAAACCCTTACAAAGAGAAGCTATACGAAGAAAAACAGGAGGTCGAGCAGCACCACCGCCAAAATGAAGAAGGGCACATTAATAACCCACT CGCAACAGGTTCAGCACCACCAAATCCAATCATCTTCTGCCACCTCAGCAGCAGCAGCGTCATCATCTCGCTTCCAGAACGTTCTGGACTCCGACCTCAT CGATCCTCAGCTGCTTGCTGAGGATGTTGATGAAAAAGATTTCATCCTCAGTCAAGATTTCTTTTGCACTCCAGATTATATCACACCAGACAATCAGAAC TTGCTCTATAGTTTTGATTGCAACAAGGAAAACATTCCATGCCCCAAATCACCGGAGAAAGTAAACACTGTCATATCAAAAAAGCTTCGACAGGTTCATC CTCTCAGTCCTACATTGTCTGACCAGCAACCAATCGTGGATATCGGGAAAGATAACATCAGTGAAGAAGAAATGTTAATTGAGAAACCATCAACTCTGGA AACCAAAAAGCCTCAAAATTATGTATCGCAATCTGCTGTTTTTTTACGCTGTCGGGTTATGCCCCCTCCTTGCATCAAGAACCCGTATTTAACAGATGCT TCAGAAGTGGGTATAGATCCATTTGGCAATCAAAGATCAAAATGCGCAGGATTTTTTGCAGCATTTGCCGGCGGTGATGGCCTGTCACGCTATCACACAG ATTTTCATGAAATCCAGCAAATTGGAACTGGGAACTTCAGTTGTGTTTTCAAAGTTCTGAAAAGAATCGATGGTTGCTTGTATGCTGTGAAACATAGCAC AAGGCAGTTGCATCAAGATGCAGAAAGGAGGAAAGCATTAATGGAGGTTCAAGCTCTAGCAGCTTTAGGATATCATGAGAACATTGTTGGATACTACTCG TCTTGGTTTGAAAATGAGCAACTCTACATTCAGATGGAACTCTGTGATGGCAGCTTATCCATTAATAGATCTTCTGAATCCATAACAGAGGGAGAAGCAC TGCAAGTCTTACTTCAGATTGCGAAGGCATTAAAGTTTATTCATGAGAGAGGAATAGCTCACCTAGATGTGAAACCTGACAATATTTATTTCAAGAATGG AGTTTATAAGCTCGGTGATTTTGGATGTGCAACACTTCTTGACCAGAGTCTACCAGTTGAAGAGGGTGATGCACGCTATATGCCTCAAGAAATCCTGAAT GAGAATTACAATTATCTTGACAAAGTTGACATCTTTTCCTTGGGAGCAGCTATTTATGAGCTTATTAGGGGGTCAACTTTGCCACAATCAGGATCCCATT TGTTTAACCTCAGGGAGGGCAAACTGCCTCTCCTTCCTGGTCATTCATTGCAACTTCAGAACTTACTAAAGGCAGGTTGGGTGGGGTATTCACCGAATCT GGCCAAATTGTCATCGTGCTTGCAGACTTTTATGGAAATGGGTCTAAACTGTCTTGAAGGCGGCATCTTAAAAGAAAAAAAATGGTATTTAATGACCATG TTCTCTTTTACAGTTTTGTTCAAGTACGTAGTTCAGAATGGTTCACTTACATTTACTTGCTGCTGTATCTTATTTCATTGGTTAGAATTGTCCCTGTGTA GTATAGTTTGCAGGAACTGTATATGA
AA sequence Show only first row Show all	>Potri.014G132400.4 pacid=42762748 polypeptide=Potri.014G132400.4.p locus=Potri.014G132400 ID=Potri.014G132400.4.v4.1 annot-version=v4.1 MKRKTLTKRSYTKKNRRSSSTTAKMKKGTLITHSQQVQHHQIQSSSATSAAAASSSRFQNVLDSDLIDPQLLAEDVDEKDFILSQDFFCTPDYITPDNQN LLYSFDCNKENIPCPKSPEKVNTVISKKLRQVHPLSPTLSDQQPIVDIGKDNISEEEMLIEKPSTLETKKPQNYVSQSAVFLRCRVMPPPCIKNPYLTDA SEVGIDPFGNQRSKCAGFFAAFAGGDGLSRYHTDFHEIQQIGTGNFSCVFKVLKRIDGCLYAVKHSTRQLHQDAERRKALMEVQALAALGYHENIVGYYS SWFENEQLYIQMELCDGSLSINRSSESITEGEALQVLLQIAKALKFIHERGIAHLDVKPDNIYFKNGVYKLGDFGCATLLDQSLPVEEGDARYMPQEILN ENYNYLDKVDIFSLGAAIYELIRGSTLPQSGSHLFNLREGKLPLLPGHSLQLQNLLKAGWVGYSPNLAKLSSCLQTFMEMGLNCLEGGILKEKKWYLMTM FSFTVLFKYVVQNGSLTFTCCCILFHWLELSLCSIVCRNCI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G02970		ATWEE1, WEE1	WEE1 kinase homolog (.1)		Potri.014G132400 [exp]	0	1
AT1G79860		ATROPGEF12, ROP...	MATERNAL EFFECT EMBRYO ARREST ...		Potri.001G183800 [exp]	1.00	0.8678
AT3G49250		IDN1, DMS3	INVOLVED IN DE NOVO 1, defecti...		Potri.012G016000 [exp]	1.41	0.8312
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Potri.012G043000 [exp]	2.00	0.8219	Pt-SKOR.2
AT1G11440			unknown protein		Potri.004G029500 [exp]	3.16	0.8082
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.002G010600 [exp]	8.71	0.7829
					Potri.007G067650 [exp]	15.87	0.8184
AT4G16447			unknown protein		Potri.014G165000 [exp]	16.49	0.7418
AT1G08390			unknown protein		Potri.004G190200 [exp]	18.43	0.7923
					Potri.002G214475 [exp]	23.45	0.8032
					Potri.001G103200 [exp]	24.73	0.7657

Compare expression of checked genes

Potri.014G132400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.