Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-LD.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G02560 349 / 8e-104 HD LD luminidependens, Homeodomain-like superfamily protein (.1.2) AT1G19860 52 / 2e-06 C3HZnF Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G209216 [exp] 1631 / 0 AT4G02560 364 / 4e-109 luminidependens, Homeodomain-like superfamily protein (.1.2) Potri.005G116001 [exp] 64 / 8e-11 AT1G19860 122 / 3e-32 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.005G236300 [exp] 57 / 4e-08 AT1G19860 318 / 2e-105 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.002G025100 [exp] 52 / 1e-06 AT1G19860 319 / 8e-106 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Potri.007G013600 [exp] 51 / 4e-06 AT1G19860 109 / 1e-25 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009816 [exp] 634 / 0 AT4G02560 559 / 0.0 luminidependens, Homeodomain-like superfamily protein (.1.2) Lus10040921 [exp] 628 / 0 AT4G02560 677 / 0.0 luminidependens, Homeodomain-like superfamily protein (.1.2) Lus10024316 [exp] 52 / 3e-06 AT1G19860 261 / 1e-83 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1) Lus10012404 [exp] 50 / 6e-06 AT1G19860 256 / 1e-81 Zinc finger C-x8-C-x5-C-x3-H type family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.014G132800.1 pacid=42763587 polypeptide=Potri.014G132800.1.p locus=Potri.014G132800 ID=Potri.014G132800.1.v4.1 annot-version=v4.1 ATGGAGGATTTGACAGAGACAGAGATTGGGAGCTCTGTCGAGTCCTTTCAAAAGTTTTTGGATTCGCAGAGAGAGGTTTTCCACAACCAAATCGATCATC TTCGAAGAATTGTCGTCACTCAATGCAAGCTCACTGGTGTCAATCCTCTTTCTCAAGAAATGGCAGCTGGTGCTCTTTCGATAAAAATCGGGAAAAGACC TCGAGATTTGATAAACCCTAAGGCGGTCAAGTATATGCAAGAAGTTTTCACTATTAAAGATGCATTCAGTAAGAAGGAATCACGAGATATTAGTGTTCAA TTTGGTGCTACAGTCACGCAGGTTCGGGATTTTTTTGCCAGCCAACGTACGAGAGTGAGGAAACTGATTCGGTTGTCAATGGAGAAGGCTATTAGAGTTA ATGCACACAAGGAACCTCAAAATGGGGTCCTAACGACATCGGATGCTTTGATGCCTATTGATTTGGTTCCTTTGAACTCTGTTGACCCCAATCAAGTTCC CCTAAATTATGTTTGCTCCAATCCAGCTATGTTAAACTCTGTTAGCCCCAATCCAATTCACTTGAACTCTGCTGGCTCCATTTCAGCTCCCTTAAACTCT GTTAGCTCCATTTCAGCTCCCTTAAACTCTGTTAGCCCCAATCCATTTCACTTGGAATCTGTCAGCTCCAATCCAGTTCCCTTAATTTCTGTTAGTCCAA ATCCAGTTCCCTTAAACCATGCAAGTCTGTATCCAGTTCCCTTAGACTCAGTTGCCCGCAATCCTGTTCCCTTAAACTCTGCTGGTCCTTCCAGAGTTGA TGAAGCCCCCTCTTGCTCAACACAGGACGACATGCTACCTGGTTTAGATGAATTAGACAAACATTTTGTTGAGAATATTTTTGGTTTGTTGCGGAAAGAA GAAACATTTACTGGGCAGGTGAAGCTCATGGAATGGATCTTGCAAATACATACTCTCTCTGTTCTAAATTGGTTTCTATTTAATGGTGGTGTCATGATTT TGGTAACATGGTTAAGTCAAGCTGCTGCTGAAGAACAAACGAGCGTTCTTATTGTCACCTTGAATGTCTTCTGTCATTTGCCCTTACATAAAGCTCCTCC TGAACACATGTCAGCCATACTTCGCGGTGTTAATAGACTGCGGTTTTACAGGACTTCAGACATATCAAACAGGGCCAGGGTTTTGTTATCAAGATGGAGC AAAGTGTTTGCAAGAAGTCAAGCAATGAAAAAACCCTATGGCGTAAACTTCTCTACAGATGCACAGGACATGATTTTGAAGCAGAGCATTGATGAAATTA TGGGCAATGAATTATGGCAGTCTGATATCAGTAATCCTGATGGTGTTCCTGCTCTCTCATTGGAAAGTTCAGAAAATATCAGGAAAATCGAGTCTTCACA AGCATTGAAGCTGTTGCCAGCATCAACAGATGATCCGAGCAGAAAGCACATCCTAGGTGCACCTTCATCCCATACAAGAGAACGTAGAAAAGTTCAGCTT GTGGAACAGCCTGGCCAGAAAACAGCTGGCAGAAGCCCTCAGGCCACCAAAGCTGCTCCTGTTAGTACAGGTCGCCCAATGTCTGCTGATGATATCCAAA AAGCAAAAATGCGTGCTTTATTCATGCAGAACAAGCATGGGAAAACAGGTCTTTCATCTAATGGAAATACTGGTATGAAAAATGGACCTTCAAGTATGTC TGCAAGTTTGTCTCTAGTTTCCAAAATTCATATTCGGCCAAAGATTGAGGAATACAAGAAACCTGTGATGCCTCCCCTGGAAGTTTCTTGTAAGGTTGAG GGGTCCCTCAATCCAAAGAAAGAAATTGATTCAAAGGAAGCCATGTGGGGAGTTTGTATTGAAGTCAAGATCCCATGGAAGACTCCTCCAGAAATAAAAC TCAACGTTCTCTGGAGAGTGGGCACTGGTGAAAATGGAAAAGAAGTTGATGTTCAGAAAAACAGAAACCGTAGGGAGGTAGAAACCATCTATCAGACAGT CCAGGAGTTACCATCTAACCCCAAGGAACCATGGGACCTCGAGATGGACTATGATGACACGTTGACCCCAGAAATTCCAATTGAACAGCCACCTGATGCT GATGGTGCAGAAATACAGTTTTCCCTGACCGAACATGTAAACACTGTAGTTGCACCATCACCAGCACCTTCCCTGCCTCAGGTTGGTGGAGGGAGTGCAA CTGAACCAGATCTTGAGTTGCTTGCTGTATTGCTAAAAAATCCAGAATTGGTTTTTGCATTGACTTCTGGCCAAGCTGGCAATTTATCAAGTGAGGAAAC CGTGAAACTGCTTGATATGATAAAGGCTGGAGGGGCTGGTTTGGCAGGTAGTTTAAATGGGCTTGTTGGGAAAGTAGGGGAGAAGGTTGAAGTTTCTCTT CCATCACCAACTCCGTCAAGCAATCCTGGAACGAGTGGATGGAGATCAGAAGGTGACAAGAATCCATTTTCCCAGCAGGCTTCATCGGGGAACAGAGTTG CATACACTGACCCCGGAGTCCCCACCGTTGCTCCTCTAGCCGAGAACACAAGCTCGGTGCAACGTCAAAATCAAGCCACTAACATCAGAACACCACAGCA GCAAGCAAGCAGGCCAATACTATCCCAACATCATCCTTTCTCATTGTCTCAAACAAGCATCATAGTACCTGAAAACCGACAACCTCCGATGGTTCTCCAA TCCCAACAGAGTTATCCCACCAATTCTTCAATGTTGCATACGCCATCCTCAGAAATTGTTTTTACCATGAAAAATTTACCCGTCAATACCCCTTCCCTGC CGAACCCTTCAGCTGCAATTGGGCCTTCAATGTGGGTTGAAACCATGAACAACGTAAAACCAGCTCCATCCATTTCTCTCACATCAAATCCACCAGAGAG ATGGCCAGTTCCATTTCCACGATCAACATCCGCAGTACCAGCTCCAACACAGTTACAGTCACATATAAACGAACCTCCCACTGTACACTCGTCGTGGCCA CATACTGGTGATGTAGGTCCAATGCGTGATTCCTGGAGAGTTAGGCAGAGTTTAGTATCAAATTCCCCATCTCATGTTAATCAAAATAACTATGTGCCAC CATATGGAGGGCCTGTGCAGCCACAGTTGCGGTCAGGTCCTCCTCGGGAAAGAAATGAATATTTGGGTGATGAGGGTATTGAGTCTTGGAGTCCGGAGAA CAGCCGTTTTGAATCACAAGAGTACATGTCAGGGAGAAACTATTCAGGAGCCAGGACGAATTCCGGATGGGACTACCTGCCTGATAATAGGTCCAGGCAA CGGAATTCTTCTGGGTACAGGGACCGTAACCGGAATGGAAACAGAAGACGGCACTGA
AA sequence Show only first row Show all	>Potri.014G132800.1 pacid=42763587 polypeptide=Potri.014G132800.1.p locus=Potri.014G132800 ID=Potri.014G132800.1.v4.1 annot-version=v4.1 MEDLTETEIGSSVESFQKFLDSQREVFHNQIDHLRRIVVTQCKLTGVNPLSQEMAAGALSIKIGKRPRDLINPKAVKYMQEVFTIKDAFSKKESRDISVQ FGATVTQVRDFFASQRTRVRKLIRLSMEKAIRVNAHKEPQNGVLTTSDALMPIDLVPLNSVDPNQVPLNYVCSNPAMLNSVSPNPIHLNSAGSISAPLNS VSSISAPLNSVSPNPFHLESVSSNPVPLISVSPNPVPLNHASLYPVPLDSVARNPVPLNSAGPSRVDEAPSCSTQDDMLPGLDELDKHFVENIFGLLRKE ETFTGQVKLMEWILQIHTLSVLNWFLFNGGVMILVTWLSQAAAEEQTSVLIVTLNVFCHLPLHKAPPEHMSAILRGVNRLRFYRTSDISNRARVLLSRWS KVFARSQAMKKPYGVNFSTDAQDMILKQSIDEIMGNELWQSDISNPDGVPALSLESSENIRKIESSQALKLLPASTDDPSRKHILGAPSSHTRERRKVQL VEQPGQKTAGRSPQATKAAPVSTGRPMSADDIQKAKMRALFMQNKHGKTGLSSNGNTGMKNGPSSMSASLSLVSKIHIRPKIEEYKKPVMPPLEVSCKVE GSLNPKKEIDSKEAMWGVCIEVKIPWKTPPEIKLNVLWRVGTGENGKEVDVQKNRNRREVETIYQTVQELPSNPKEPWDLEMDYDDTLTPEIPIEQPPDA DGAEIQFSLTEHVNTVVAPSPAPSLPQVGGGSATEPDLELLAVLLKNPELVFALTSGQAGNLSSEETVKLLDMIKAGGAGLAGSLNGLVGKVGEKVEVSL PSPTPSSNPGTSGWRSEGDKNPFSQQASSGNRVAYTDPGVPTVAPLAENTSSVQRQNQATNIRTPQQQASRPILSQHHPFSLSQTSIIVPENRQPPMVLQ SQQSYPTNSSMLHTPSSEIVFTMKNLPVNTPSLPNPSAAIGPSMWVETMNNVKPAPSISLTSNPPERWPVPFPRSTSAVPAPTQLQSHINEPPTVHSSWP HTGDVGPMRDSWRVRQSLVSNSPSHVNQNNYVPPYGGPVQPQLRSGPPRERNEYLGDEGIESWSPENSRFESQEYMSGRNYSGARTNSGWDYLPDNRSRQ RNSSGYRDRNRNGNRRRH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Potri.014G132800 [exp]	0	1	Pt-LD.2
AT4G02560	HD	LD	luminidependens, Homeodomain-l...		Potri.002G209216 [exp]	1.00	0.9657
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Potri.005G107600 [exp]	1.73	0.9365	Pt-RPB1.1
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.005G092700 [exp]	2.00	0.9395
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Potri.001G190000 [exp]	2.64	0.9113	PAFA901
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.012G094300 [exp]	2.82	0.9249
AT1G04210			Leucine-rich repeat protein ki...		Potri.010G081400 [exp]	3.16	0.9237
AT1G79000		ATHAC1, ATHPCAT...	ARABIDOPSIS THALIANA P300/CBP ...		Potri.007G003400 [exp]	4.24	0.9191	HAC901,Pt-HAC1.4
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Potri.002G119900 [exp]	6.16	0.8871
AT4G09980		EMB1691	EMBRYO DEFECTIVE 1691, Methylt...		Potri.012G144400 [exp]	7.34	0.9074
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Potri.006G047100 [exp]	10.58	0.8897

Compare expression of checked genes

Potri.014G132800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.