Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G62900 322 / 2e-89 CW-type Zinc Finger (.1) AT1G02990 292 / 1e-80 unknown protein AT4G15730 198 / 4e-51 CW-type Zinc Finger (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G209409 [exp] 2278 / 0 AT3G62900 285 / 7e-78 CW-type Zinc Finger (.1) Potri.013G020200 [exp] 276 / 7e-75 AT3G62900 174 / 1e-43 CW-type Zinc Finger (.1) Potri.005G028700 [exp] 238 / 5e-63 AT3G62900 176 / 5e-44 CW-type Zinc Finger (.1) Potri.004G035300 [exp] 47 / 0.0002 AT4G32010 483 / 3e-158 VP1/ABI3-LIKE 2, HSI2-like 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040919 [exp] 1065 / 0 AT3G62900 307 / 6e-85 CW-type Zinc Finger (.1) Lus10009815 [exp] 506 / 2e-152 AT3G62900 301 / 4e-83 CW-type Zinc Finger (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07496 [poplar] [flax] zf-CW CW-type Zinc Finger
Representative CDS sequence Show only first row Show all	>Potri.014G132900.1 pacid=42763627 polypeptide=Potri.014G132900.1.p locus=Potri.014G132900 ID=Potri.014G132900.1.v4.1 annot-version=v4.1 ATGATTTCTCTGGGGAGGAGAGATGGGAGAGAGGACCTAGGGATAGGGTTTGGCAGCGAGAGAGAGATGGAAGATACCGAGCTTGAAGAAGGGGAGGCCT GCTCTTACCATAATATTAACAACAACGAAGATGATTATGATGCGAGCATGGACCCTGATATTGCTCTGTCTTACATAGATGAAAAACTGCAAGATGTCTT GGGACACTTTCAAAAAGATTTTGAAGGTGGAGTTTCGGCTGAGAACTTGGGGGCCAAGTTCGGTGGTTATGGTTCATTTTTACCTACCTATCAGCGGTCT CCTGGTTGGTCCCACCCAAGGACCTCACCAAAAATTCAACATCGCAATGCATCTAGATCTCCAAACAATTTGCAACTGGAGGGTGGCCGCCGGAGCTCTG TATCTTCGTCAACTGCATCTCAATCACTAAGACTTGAACCTTCTTCTACAGTATTGAAAACAACATCCTCCTTGAATGAGTCGGTTAAACAAGAAGCATG TGTGCCATCCACTCATTTTGCTGAGGAACTTGTTCCTAGAGATGAATGTGTAAACAGGAAATCTGCTAGTTTACAGAAGATGCTGAAAGTTCGAATCAAA GTCGGTTCTGATAACTTGTCGACACAGAAAAATGCTGCAATCTACAGTGGTCTTGGGCTTGATGTCTCACCATCTTCCTCAATGGATGACAGCCCCTCTG AAAGTGAAGGGATGTCTCATGATCCTCAAGATGCTCATCTGGAATCTCCTAATTATATTCTTCAGATAATGACATCTTTTCCGGTGCATGGAGCTCTGCT GCTATCACCTCTTCCTGATGATCTTCTCCATCTGAAAGAGATGGAAAAATTTATTAAAGACAGTGGATGCTTGTCTGTTCCAAGGTTTGGTCCTGAAAAT TGTTGCATTGTAGTGAATGGGTCTAGCTCTGTAAAGGGTGATGGGACAATGTTTGGAGAGAAGAAAATAAAGTCAATGGCAAGAAATGAACTTTCAGCGG AATCAAAGAGTGATATTAATAAGGATTCTGGGATTGGTGTTGGTGTTATATCGAAGGAGATAGAACTTGACACCTTTGCTTGTGAGGAGCTTGTTTCTAA TACCTTAAAGCTTCCACTTTTGTCAAATTCATATTCTGCTGTTGTTGGCACTTCAAAGGGAATGGGTAGGGCATCTAACGTGTCCAAGGGAGTGATGAGT GACAAAGGTTTTTCTGGTCTAACAAAAGAGGAATTACCAGTGCCAGTATTCACTCAAGAAAATGGGTCGATCAAGAATTCCAAATCCAAGTCCTCTGGAA AGGTTTGGGAAGATAGAAAAGCTATTAGTCTTGGCAGTGATTCAGTCTCCCCAAGGAAAGACGGCCATCGCAAAGGAGAAAAGCCTCATGAATCAGTCAA AATTGACTCGAATGTTTCAAAGGGGAGGAAGGCTCAAAATCAGGCTCCAACAGAACCTGCCAAGCAGAATGCTGATGAGAAAGCTATGTTGTATGAACAG GAAGGTATGAAGTTACCTCATGCTAAGGAGTCCTCTTCTGAGGGGAAAAAAAAACTAAAGGGAAGTCAAAGTCACGGCACTGTAGTTGCTGAGGCGCCAA AAGAGAGTTTTAGGCTTAACTCGTCTTTGGCACCGAAAAATAAGAAGAGCAGTTATGCTGACAATTATACAACTAAAGTAGAGTCGGAAGACTTGAAATT ACAAAAGAATTCTGGAAAAGCTGGGGATAGATATAGAGAATTTTTTGGGGACATGGAACCAGAACAAGAAGAATTCGGAATGAGTACGTTGGTAAAGAGT TATGAGGATAGGCTGGAGGACTTTGAAATGGTTGAATTGGGCACACATGGAACTAACAGCACATCCAAGGAAAGATCAAGCAGTAAGAAAGTGGATAACC TGTTAACATCTGAAGCATTTCCTAAAGCTGCTTCAACTGGTGCTTTGCACAATGGAGACGGGCCCATAACTGATACTGCTCCTGCTGAAGATAATTGGGT CTGTTGTGACAAGTGTCAAACATGGCGGCTTCTTCCACCTCGTACAAATCCTGATGACCTGCCTGAAAAGTGGCTGTGTAGCATGCTTGACTGGCTGCCT GGTATGAACCGGTGTAATTTTAGTGAGGATGAAACAACCCTTGCAACTCGGTCTCTTAAACAAAACACTTCTGGTGGAGATATATCCAAAGAAACTGTGG CTGGTGTTTGGCATCCTGATCAGAGCCACCAAAATTTTGGTTCACATGCTGCGCTTCCTGGTGGAAGAAAAAAGCATGGTTCAAAAGAGTTATCAAATAT GATGTATAAAGAAGACGGACCTATTCAGTTGTCAAACCATACAAAGAAAAGCTTACATGCGCCAGTGACAAATAGAGGCTTAAATGATGTGAAACCAGCT CTTGTGGTAAGTGAACCTGATTCTTTGAAACCGAGCAAGTCTAATTTAGCTGCGGAGAAACACAAACATAAGCCGAAAGATAAGCATAGAGGACTGGACA ACTTTTCTGACCGAGGTGGTGGTTCAAAGCGATCAAAGGGGAAAGGCAAAAGGGACCCTGATCAAGATTGTTTTAGAGCTTCTAAGAAAATCAGAACTGA AGGTTTTCCAGAAGATTGGACGTCTGATCATGGTGGGGCAATTGAAAAGGTGGGTCCTCCTTCAAGCAATGGTTTGGCTATGGCATCATCAGGGAAGAAT CCACCCAAATACAATGATTGCACTTCTAAGAACATGAAGCATGATCAGAAGGACTGGGCTCAACTTTCTTCTAAAAATCCAAAGGAGGATGTCCGCGCTT CCTTGGATAATGGGTCTGTGGATATGGCGAACTGTGATGATAGAGATACAAAAAAGAGGAAAGTGAAGGAAAGTCATGATGCTCAACTCTATCGGGATTC CCTTCCAAACACAGGGCATCATCTCCAGGATAGTAATATCATGGCCAAGGAGGAGTTCAGTGAGAATGACTACAGGAAGGTTAAGAAGCCCAGAGTATCC AGGTCCGAAGGGAAGGAGGCTAGTGGAAGTAAAAGCAACGGTAGAACAGACAAAAAAGGTAGTCATAGAAAGAACCAGCAACTACGACATGACCTAGGGA GCACCCTATCTCAGCGGAGCTTGGATGGTGTGGATTCTTTGAAGAGGGATTCTGGATCTTTACATGTGGCAGCTAATTCTAGCTCTTCCAAAGTTTCTGG TTCCCATAAAACCAAATCCAATTTTCCTGATGCAAAAGGCTCGCCTGTAGAATCAGTTTCATCATCACCTATGAGAGTTTCAAAACCAGAAAAACTTGCA TCGGCAAGAAAGAATGTCACCAAAAAAGATGCTTCTGTCGATGCTGGTTTCTTTGCCCCAGGTGGCCCAAGAAGATTTTCAGATGGGGAAGATGATGGTG GGAATGATCAATCTGGGACAGCAAGGAAGGCAAAAACTCTAGTGCATATTGTTCCTTCTCCAGATATTGCAGATGGCCACCTCTCAAATGATGTAGATTT TCTAAGCCAAAACACTCCTCATCGTAGTAAACCGGCAGCTTTGGATCCATGCCATGACAATGAAAGACGAAATGAAAATCACCATCTTGTGAATGGGTCG CGTCCAAGGAAGTCTGGAAAGGGTTCCTCCTCACGGTCTAAGGACAAGACTAGGAAATTTAATTCTGAGTTCGAAAATGAAGTTAAGGTTTCCAATTCCT TTAATGCAGAAGCACCTTCCTATGAAGTAAGACCAACAAATTGCAAAAACAAGACTGAAGTGAAGTTAGGGATCAAACCTGAGGAAAATGAGGACAGATA TGTTGACAAGAAGGACTATCAAGGACAAGTGTTGAGTGATAACAGTAAAAGAGTGAATCAGTTAAATGTCAGGGGACCCAATGGTTCGGATGTTGAAGTA GGTGCTACTCGCAACCATGATGCAGTCTCTACTCCAAAGCAGAGTGTGCTGATAGATAATGAAAAGGTCTCTGATAGAGGGACGACACAATCATTGCCTT CTTCTGGAGGAGCTCAAAATGAGACACTTGCTGGCAGCCCTCATCCAAATTCTTTATCTCACCAAGGAAACAGCGCCAATATGTTGGTTGTTAATGCCTC TGCTGGGGAAAATACTGAAATGAAGGAGTTGAAACAGAGTAGAAAGGTCAATGATCCAAATGGGATTGATCATCATCATCATAGCAGTTCCAGAAATGCC TCATCAAATGGGCACAGGGTCAGGGATCTTGATGGTCCAAGTTCAGTTAAAAGGGATTCCTCCAGTCAGGCTGCTAACAATGCTTTGAAAGAAGCTAAAA ATATGAAACACATGGCTGATCGTGTCAAGAATGCCGGGTCAAATCTTGAGAGTACAAGGCTTTACTTCGAGGCAGCTCTGAAGTTTCTTCATGGAGCATC TCTGTTGGAAATCTGTAGTGGTGAGAGTGCCAAAAATGGAGAGCCAATGCAAGTTTACAGCAGCACTGCGAAACTGTGCGAGTTTTGTGCTCACGAATAT GAGAAATCCAAAGACATGGCTGCTGCTGCTCTGGCCTACAAATGCATGGAGGTTGCATACATGAGGGCAATTTATTCCTCACATACCACTGCAAACAGAG ATCGTCATGAGTTGCAGATGGCTTTACAAATTATTCCTCCAGGTGAATCACCTTCTTCTTCTGCCTCTGATATTGATAACCTGAACCACACGACAATAGC AGACAAGGTTCCCTTAACCAAAGGCGTAAGCTCTCCTCAAGTAACTGGAAGTCACATTATTGCTGCACGGAATCGTCCCAGCTTCGTGCGATTGCTCAGA TTTGCACAGGATGTAAATTCTGCAATGGAAGCCTCTAGAAAGTCACGCCTTGCTTTCGCGGCAGCTAATGTCAGCTTGGGAGAAGCCCGATGTGGAGAGG GCATTTCTTCCATTAAAACAGCTCTTGATTTTAACTTCCAAGATGTGGAGGGACTACTACGTTTGGTGCGGCTTGCAATTGAAGCTATTAGCCGCTAA
AA sequence Show only first row Show all	>Potri.014G132900.1 pacid=42763627 polypeptide=Potri.014G132900.1.p locus=Potri.014G132900 ID=Potri.014G132900.1.v4.1 annot-version=v4.1 MISLGRRDGREDLGIGFGSEREMEDTELEEGEACSYHNINNNEDDYDASMDPDIALSYIDEKLQDVLGHFQKDFEGGVSAENLGAKFGGYGSFLPTYQRS PGWSHPRTSPKIQHRNASRSPNNLQLEGGRRSSVSSSTASQSLRLEPSSTVLKTTSSLNESVKQEACVPSTHFAEELVPRDECVNRKSASLQKMLKVRIK VGSDNLSTQKNAAIYSGLGLDVSPSSSMDDSPSESEGMSHDPQDAHLESPNYILQIMTSFPVHGALLLSPLPDDLLHLKEMEKFIKDSGCLSVPRFGPEN CCIVVNGSSSVKGDGTMFGEKKIKSMARNELSAESKSDINKDSGIGVGVISKEIELDTFACEELVSNTLKLPLLSNSYSAVVGTSKGMGRASNVSKGVMS DKGFSGLTKEELPVPVFTQENGSIKNSKSKSSGKVWEDRKAISLGSDSVSPRKDGHRKGEKPHESVKIDSNVSKGRKAQNQAPTEPAKQNADEKAMLYEQ EGMKLPHAKESSSEGKKKLKGSQSHGTVVAEAPKESFRLNSSLAPKNKKSSYADNYTTKVESEDLKLQKNSGKAGDRYREFFGDMEPEQEEFGMSTLVKS YEDRLEDFEMVELGTHGTNSTSKERSSSKKVDNLLTSEAFPKAASTGALHNGDGPITDTAPAEDNWVCCDKCQTWRLLPPRTNPDDLPEKWLCSMLDWLP GMNRCNFSEDETTLATRSLKQNTSGGDISKETVAGVWHPDQSHQNFGSHAALPGGRKKHGSKELSNMMYKEDGPIQLSNHTKKSLHAPVTNRGLNDVKPA LVVSEPDSLKPSKSNLAAEKHKHKPKDKHRGLDNFSDRGGGSKRSKGKGKRDPDQDCFRASKKIRTEGFPEDWTSDHGGAIEKVGPPSSNGLAMASSGKN PPKYNDCTSKNMKHDQKDWAQLSSKNPKEDVRASLDNGSVDMANCDDRDTKKRKVKESHDAQLYRDSLPNTGHHLQDSNIMAKEEFSENDYRKVKKPRVS RSEGKEASGSKSNGRTDKKGSHRKNQQLRHDLGSTLSQRSLDGVDSLKRDSGSLHVAANSSSSKVSGSHKTKSNFPDAKGSPVESVSSSPMRVSKPEKLA SARKNVTKKDASVDAGFFAPGGPRRFSDGEDDGGNDQSGTARKAKTLVHIVPSPDIADGHLSNDVDFLSQNTPHRSKPAALDPCHDNERRNENHHLVNGS RPRKSGKGSSSRSKDKTRKFNSEFENEVKVSNSFNAEAPSYEVRPTNCKNKTEVKLGIKPEENEDRYVDKKDYQGQVLSDNSKRVNQLNVRGPNGSDVEV GATRNHDAVSTPKQSVLIDNEKVSDRGTTQSLPSSGGAQNETLAGSPHPNSLSHQGNSANMLVVNASAGENTEMKELKQSRKVNDPNGIDHHHHSSSRNA SSNGHRVRDLDGPSSVKRDSSSQAANNALKEAKNMKHMADRVKNAGSNLESTRLYFEAALKFLHGASLLEICSGESAKNGEPMQVYSSTAKLCEFCAHEY EKSKDMAAAALAYKCMEVAYMRAIYSSHTTANRDRHELQMALQIIPPGESPSSSASDIDNLNHTTIADKVPLTKGVSSPQVTGSHIIAARNRPSFVRLLR FAQDVNSAMEASRKSRLAFAAANVSLGEARCGEGISSIKTALDFNFQDVEGLLRLVRLAIEAISR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G62900			CW-type Zinc Finger (.1)		Potri.014G132900 [exp]	0	1
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.015G072900 [exp]	1.41	0.8878
AT5G13530		KEG	KEEP ON GOING, protein kinases...		Potri.001G274900 [exp]	2.00	0.8672
AT2G33540		CPL3, ATCPL3	C-terminal domain phosphatase-...		Potri.003G164300 [exp]	2.23	0.8640
AT1G77300		ASHH2, CCR1, SD...	LAZARUS 2, CAROTENOID CHLOROPL...		Potri.005G182100 [exp]	3.16	0.8817
AT3G50370			unknown protein		Potri.007G043300 [exp]	4.89	0.8725
AT4G32620			Enhancer of polycomb-like tran...		Potri.018G034900 [exp]	8.12	0.8344
AT5G53430		SET29, ATX5, SD...	SET domain group 29 (.1)		Potri.015G014300 [exp]	8.48	0.8530	SDG29.1
AT1G21580			Zinc finger C-x8-C-x5-C-x3-H t...		Potri.002G077700 [exp]	8.48	0.8453
AT5G11700			unknown protein		Potri.006G234500 [exp]	11.22	0.8417
AT3G62900			CW-type Zinc Finger (.1)		Potri.002G209409 [exp]	12.64	0.8508

Compare expression of checked genes

Potri.014G132900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.