Plant FIBer expression Database

Potri.014G133450 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.014G133450.1 pacid=42762807 polypeptide=Potri.014G133450.1.p locus=Potri.014G133450 ID=Potri.014G133450.1.v4.1 annot-version=v4.1
ATGGCGGTCTGGTTTGGCGTTCGATTTATTGAAATGAAAGAACAGTGGAGACAGAGAAAGCAAACAACACTCACAAACACAATCAGTCTGAGACAAGCTA
GAGAGCTACTTCTTGTAAAAGAATTGAAGAATAATAGAGACAGAAAGCAAACAACTTTGTACATGAGATCTGGGGCTGGAAGCTTTTTAAAGGTTCTTCT
TACGAACTTTGACTTTCTTGCTCGGGATTTTAGGCTTAATAAGTCAGGAAAGCATTGGATATGCATGCGTGATAATTGGAGAAATTGGATGCATTCTACT
GCATAA
AA sequence
>Potri.014G133450.1 pacid=42762807 polypeptide=Potri.014G133450.1.p locus=Potri.014G133450 ID=Potri.014G133450.1.v4.1 annot-version=v4.1
MAVWFGVRFIEMKEQWRQRKQTTLTNTISLRQARELLLVKELKNNRDRKQTTLYMRSGAGSFLKVLLTNFDFLARDFRLNKSGKHWICMRDNWRNWMHST
A

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.014G133450
[exp]
0 1
AT5G58140 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LI... Potri.009G170550
[exp]
12.12 0.7459
AT1G07950 MED22B Surfeit locus protein 5 subuni... Potri.008G080700
[exp]
22.44 0.7109
AT1G08460 HDA8, HDA08, AT... histone deacetylase 8 (.1) Potri.009G020500
[exp]
26.07 0.6118
AT5G11760 unknown protein Potri.006G232200
[exp]
32.93 0.6114
AT2G18630 Protein of unknown function (D... Potri.005G127401
[exp]
42.04 0.6235
AT1G01490 Heavy metal transport/detoxifi... Potri.017G145516
[exp]
44.49 0.6699
AT1G17720 ATBBETA, ATB BE... Protein phosphatase 2A, regula... Potri.001G197300
[exp]
76.81 0.5754 Pt-ATB.1
AT3G54300 ATVAMP727 vesicle-associated membrane pr... Potri.008G019400
[exp]
79.23 0.5845 VAMP727.1
AT5G65890 ACR1 ACT domain repeat 1 (.1.2) Potri.007G006500
[exp]
89.36 0.6134
AT2G30330 BLOS1 BLOC subunit 1, GCN5L1 family ... Potri.013G156700
[exp]
101.02 0.5675

Potri.014G133450 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.